Schmidt Janka J, Brandenburg Vivian B, Elders Hannah, Shahzad Saba, Schäkermann Sina, Fiedler Ronja, Knoke Lisa R, Pfänder Yvonne, Dietze Pascal, Bille Hannah, Gärtner Bela, Albin Lennart J, Leichert Lars I, Bandow Julia E, Hofmann Eckhard, Narberhaus Franz
Microbial Biology, Ruhr University Bochum, 44801 Bochum, Germany.
Bioinformatics Group, Ruhr University Bochum, 44801 Bochum, Germany.
Nucleic Acids Res. 2025 Mar 20;53(6). doi: 10.1093/nar/gkaf267.
Pathogenic bacteria often encounter fluctuating reactive oxygen species (ROS) levels, particularly during host infection, necessitating robust redox-sensing mechanisms for survival. The LysR-type transcriptional regulator (LTTR) OxyR is a widely conserved bacterial thiol-based redox sensor. However, members of the Rhizobiales also encode LsrB, a second LTTR with potential redox-sensing function. This study explores the roles of OxyR and LsrB in the plant-pathogen Agrobacterium tumefaciens. Through single and combined deletions, we observed increased H2O2 sensitivity, underscoring their function in oxidative defense. Genome-wide transcriptome profiling under H2O2 exposure revealed that OxyR and LsrB co-regulate key antioxidant genes, including katG, encoding a bifunctional catalase/peroxidase. Agrobacterium tumefaciens LsrB possesses four cysteine residues potentially involved in redox sensing. To elucidate the structural basis for redox-sensing, we applied single-particle cryo-EM (cryogenic electron microscopy) to experimentally confirm an AlphaFold model of LsrB, identifying two proximal cysteine pairs. In vitro thiol-trapping coupled with mass spectrometry confirmed reversible thiol modifications of all four residues, suggesting a functional role in redox regulation. Collectively, these findings reveal that A. tumefaciens employs two cysteine-based redox sensing transcription factors, OxyR and LsrB, to withstand oxidative stress encountered in host and soil environments.
致病细菌经常遇到活性氧(ROS)水平波动的情况,尤其是在宿主感染期间,因此需要强大的氧化还原感应机制来生存。LysR型转录调节因子(LTTR)OxyR是一种广泛保守的基于硫醇的细菌氧化还原传感器。然而,根瘤菌目成员还编码LsrB,这是另一种具有潜在氧化还原感应功能的LTTR。本研究探讨了OxyR和LsrB在植物病原菌根癌农杆菌中的作用。通过单基因缺失和联合缺失,我们观察到根癌农杆菌对过氧化氢的敏感性增加,这突出了它们在氧化防御中的作用。在过氧化氢暴露下进行的全基因组转录组分析表明,OxyR和LsrB共同调节关键抗氧化基因,包括编码双功能过氧化氢酶/过氧化物酶的katG。根癌农杆菌LsrB含有四个可能参与氧化还原感应的半胱氨酸残基。为了阐明氧化还原感应的结构基础,我们应用单颗粒冷冻电镜(低温电子显微镜)实验证实了LsrB的AlphaFold模型,确定了两对相邻的半胱氨酸。体外硫醇捕获结合质谱分析证实了所有四个残基的可逆硫醇修饰,表明其在氧化还原调节中具有功能作用。总的来说,这些发现揭示了根癌农杆菌利用两种基于半胱氨酸的氧化还原感应转录因子OxyR和LsrB来抵御在宿主和土壤环境中遇到的氧化应激。