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RNA 2'-O-甲基化的检测、功能及治疗潜力

The detection, function, and therapeutic potential of RNA 2'-O-methylation.

作者信息

Wu Kaiyuan, Li Yanqiang, Yi Yang, Yu Yang, Wang Yunxia, Zhang Lili, Cao Qi, Chen Kaifu

机构信息

Basic and Translational Research Division, Department of Cardiology, Boston Children's Hospital, Boston 02215, USA.

Department of Pediatrics, Harvard Medical School, Boston 02215, USA.

出版信息

Innov Life. 2025;3(1). doi: 10.59717/j.xinn-life.2024.100112. Epub 2024 Dec 17.


DOI:10.59717/j.xinn-life.2024.100112
PMID:40206865
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11981644/
Abstract

RNA modifications play crucial roles in shaping RNA structure, function, and metabolism. Their dysregulation has been associated with many diseases, including cancer, developmental disorders, cardiovascular diseases, as well as neurological and immune-related conditions. A particular type of RNA modification, 2'-O-methylation (Nm) stands out due to its widespread occurrence on all four types of nucleotides (A, U, G, C) and in most RNA categories, e.g., mRNA, rRNA, tRNA, miRNA, snRNA, snoRNA, and viral RNA. Nm is the addition of a methyl group to the 2' hydroxyl of the ribose moiety of a nucleoside. Given its great biological significance and reported association with many diseases, we first reviewed the occurrences and functional implications of Nm in various RNA species. We then summarized the reported Nm detection methods, ranging from biochemical techniques in the 70's and 80's to recent methods based on Illumina RNA sequencing, artificial intelligence (AI) models for computational prediction, and the latest nanopore sequencing methods currently under active development. Moreover, we discussed the applications of Nm in the realm of RNA medicine, highlighting its therapeutic potential. At last, we present perspectives on potential research directions, aiming to offer insights for future investigations on Nm modification.

摘要

RNA修饰在塑造RNA结构、功能和代谢方面发挥着关键作用。它们的失调与许多疾病有关,包括癌症、发育障碍、心血管疾病以及神经和免疫相关疾病。一种特殊类型的RNA修饰,即2'-O-甲基化(Nm),因其在所有四种核苷酸(A、U、G、C)以及大多数RNA类别(如mRNA、rRNA、tRNA、miRNA、snRNA、snoRNA和病毒RNA)中广泛存在而备受关注。Nm是在核苷核糖部分的2'羟基上添加一个甲基。鉴于其重大的生物学意义以及与许多疾病的报道关联,我们首先回顾了Nm在各种RNA种类中的发生情况及其功能影响。然后,我们总结了已报道的Nm检测方法,从20世纪70年代和80年代的生化技术到基于Illumina RNA测序的最新方法、用于计算预测的人工智能(AI)模型以及目前正在积极开发的最新纳米孔测序方法。此外,我们讨论了Nm在RNA医学领域的应用,突出了其治疗潜力。最后,我们提出了潜在研究方向的观点,旨在为未来关于Nm修饰的研究提供见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/2fb7bcd53246/nihms-2071027-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/5f4ef24abe75/nihms-2071027-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/4885e1414c73/nihms-2071027-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/d08915d168c6/nihms-2071027-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/8fac2e7abd11/nihms-2071027-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/2fb7bcd53246/nihms-2071027-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/5f4ef24abe75/nihms-2071027-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/4885e1414c73/nihms-2071027-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/d08915d168c6/nihms-2071027-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/8fac2e7abd11/nihms-2071027-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f6a/11981644/2fb7bcd53246/nihms-2071027-f0006.jpg

相似文献

[1]
The detection, function, and therapeutic potential of RNA 2'-O-methylation.

Innov Life. 2025

[2]
2'--methylation (Nm) in RNA: progress, challenges, and future directions.

RNA. 2024-4-16

[3]
Base-Resolution Sequencing Methods for Whole-Transcriptome Quantification of mRNA Modifications.

Acc Chem Res. 2024-1-2

[4]
Decoding the molecular script of 2'-O-ribomethylation: Implications across CNS disorders.

Heliyon. 2024-10-5

[5]
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets.

RNA Biol. 2024-1

[6]
[Advances in mapping analysis of ribonucleic acid modifications through sequencing].

Se Pu. 2024-7

[7]
Holistic Optimization of Bioinformatic Analysis Pipeline for Detection and Quantification of 2'-O-Methylations in RNA by RiboMethSeq.

Front Genet. 2020-2-13

[8]
Generating snoRNA-guided Programmable 2'- -methylation.

bioRxiv. 2024-11-18

[9]
RNA ribose methylation (2'-O-methylation): Occurrence, biosynthesis and biological functions.

Biochim Biophys Acta Gene Regul Mech. 2018-12-17

[10]
Disorders and roles of tsRNA, snoRNA, snRNA and piRNA in cancer.

J Med Genet. 2022-7

引用本文的文献

[1]
Epitranscriptomic alterations induced by environmental toxins: implications for RNA modifications and disease.

Genes Environ. 2025-8-4

[2]
MultiV_Nm: a prediction method for 2'-O-methylation sites based on multi-view features.

Front Genet. 2025-5-27

本文引用的文献

[1]
Sci-ModoM: a quantitative database of transcriptome-wide high-throughput RNA modification sites.

Nucleic Acids Res. 2025-1-6

[2]
2'-O-methylation at internal sites on mRNA promotes mRNA stability.

Mol Cell. 2024-6-20

[3]
Internal mRNA 2'-O-methyl mapping by nanopore sequencing and consequence on mRNA stability and role in cancer.

Mol Cell. 2024-6-20

[4]
Nm-Nano: a machine learning framework for transcriptome-wide single-molecule mapping of 2´-O-methylation (Nm) sites in nanopore direct RNA sequencing datasets.

RNA Biol. 2024-1

[5]
Transfer learning enables identification of multiple types of RNA modifications using nanopore direct RNA sequencing.

Nat Commun. 2024-5-14

[6]
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications.

Nat Commun. 2024-5-9

[7]
Detection of ac4C in human mRNA is preserved upon data reassessment.

Mol Cell. 2024-4-18

[8]
No evidence for ac4C within human mRNA upon data reassessment.

Mol Cell. 2024-4-18

[9]
Detecting mA at single-molecular resolution via direct RNA sequencing and realistic training data.

Nat Commun. 2024-4-18

[10]
2'--methylation (Nm) in RNA: progress, challenges, and future directions.

RNA. 2024-4-16

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