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基于基因组靶向测序(GBTS)的东亚葡萄霜霉病抗性相关单核苷酸多态性数据集。

A Dataset of SNPs Related to Downy Mildew Resistance in East Asian Grape Based on GBTS.

作者信息

Yang Bohan, Li Chen, Li Rui, Peng Yachun, Li Xiangyi, Dong Zhigang, Zhao Qifeng, Lin James, Gao Qifei, Lu Jiang, Fu Peining

机构信息

Center for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.

Network and Information Center, Shanghai Jiao Tong University, Shanghai, China.

出版信息

Sci Data. 2025 Apr 14;12(1):619. doi: 10.1038/s41597-025-04765-8.

DOI:10.1038/s41597-025-04765-8
PMID:40229293
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11997181/
Abstract

Grapevine is an important commercial crop widely grown in the world. However, grapevine cultivation has long been seriously threatened by grapevine downy mildew caused by Plasmopara viticola. Screening the resistance resources and identifying the resistance germplasm is the key to improve the resistance of cultivars to P. viticola. East Asia is one of the three origin regions of wild grapevine (North America, Eurasia and East Asia), and many varieties have strong disease resistance. In present study, we selected nine wild East Asian grape vines and selected three of them with the highest P. viticola resistance to construct genetic populations. Genotyping by Targeted Sequencing (GBTS) is a high-throughput and cost-effective technology for sequencing specific genome regions, and its application in genetic population analysis and disease resistance related markers identification has revealed that may be abundant P. viticola-resistant germplasm in East Asian grapes. Our sequencing data and disease resistance grade data provided a valuable reference for mining downy mildew resistant germplasm of East Asian grape and breeding resistant varieties.

摘要

葡萄是一种重要的经济作物,在全球广泛种植。然而,葡萄栽培长期以来一直受到由葡萄生单轴霉引起的葡萄霜霉病的严重威胁。筛选抗性资源并鉴定抗性种质是提高品种对葡萄生单轴霉抗性的关键。东亚是野生葡萄的三个起源地区之一(北美、欧亚大陆和东亚),许多品种具有很强的抗病性。在本研究中,我们选择了9种东亚野生葡萄,并挑选了其中对葡萄生单轴霉抗性最高的3种来构建遗传群体。靶向测序基因分型(GBTS)是一种用于对特定基因组区域进行测序的高通量且经济高效的技术,其在遗传群体分析和抗病相关标记鉴定中的应用表明东亚葡萄中可能存在丰富的抗葡萄生单轴霉种质。我们的测序数据和抗病等级数据为挖掘东亚葡萄抗霜霉病种质和培育抗病品种提供了有价值的参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/d664ad6bf786/41597_2025_4765_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/03bf459a390c/41597_2025_4765_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/320e58fdf081/41597_2025_4765_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/d6150dce4b5f/41597_2025_4765_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/d664ad6bf786/41597_2025_4765_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/03bf459a390c/41597_2025_4765_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/320e58fdf081/41597_2025_4765_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/d6150dce4b5f/41597_2025_4765_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369f/11997181/d664ad6bf786/41597_2025_4765_Fig4_HTML.jpg

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本文引用的文献

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2
A Comparison of Three Types of "Vineyard Management" and Their Effects on the Structure of Populations and Epidemic Dynamics of Grape Downy Mildew.三种“葡萄园管理”方式及其对葡萄霜霉病种群结构和流行动态影响的比较
Plants (Basel). 2022 Aug 21;11(16):2175. doi: 10.3390/plants11162175.
3
The Single-Stranded DNA-Binding Gene () with a Strong Pathogen-Induced Promoter from Enhances Resistance to .
单链 DNA 结合基因 () 具有来自 的强病原体诱导启动子,可增强对 的抗性。
Int J Mol Sci. 2022 Jul 21;23(14):8052. doi: 10.3390/ijms23148052.
4
Detection and Characterization of Carboxylic Acid Amide-Resistant in China Using a TaqMan-MGB Real-Time PCR.应用 TaqMan-MGB 实时 PCR 检测和鉴定中国的羧酸酰胺抗性
Plant Dis. 2020 Sep;104(9):2338-2345. doi: 10.1094/PDIS-02-20-0291-RE. Epub 2020 Jul 22.
5
Identifying Plasmopara viticola resistance Loci in grapevine (Vitis amurensis) via genotyping-by-sequencing-based QTL mapping.利用基于测序的基因型 QTL 作图技术鉴定葡萄(Vitis amurensis)品种对白腐病的抗性基因座。
Plant Physiol Biochem. 2020 Sep;154:75-84. doi: 10.1016/j.plaphy.2020.05.016. Epub 2020 May 26.
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, a ripe rot resistance QTL in 'Shuang Hong' grapevine.“双红”葡萄中一个抗成熟腐烂的数量性状位点。
Hortic Res. 2019 Jun 1;6:67. doi: 10.1038/s41438-019-0148-0. eCollection 2019.
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Construction of a high-density linkage map and QTL detection of downy mildew resistance in Vitis aestivalis-derived 'Norton'.利用‘Norton’葡萄构建高密度连锁图谱和抗霜霉病 QTL 检测
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