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整合单细胞和批量RNA测序数据以构建基于浆细胞免疫相关基因的风险评估模型,用于预测肺腺癌患者的预后和治疗反应。

Integrated analysis of single‑cell and bulk RNA sequencing data to construct a risk assessment model based on plasma cell immune‑related genes for predicting patient prognosis and therapeutic response in lung adenocarcinoma.

作者信息

Zhou Weijun, Hu Zhuozheng, Wu Jiajun, Liu Qinghua, Jie Zhangning, Sun Hui, Zhang Wenxiong

机构信息

Department of Thoracic Surgery, The Second Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, Jiangxi 330006, P.R. China.

Department of Thoracic Surgery, Ganzhou People's Hospital, Ganzhou, Jiangxi 341099, P.R. China.

出版信息

Oncol Lett. 2025 Apr 7;29(6):271. doi: 10.3892/ol.2025.15017. eCollection 2025 Jun.

DOI:10.3892/ol.2025.15017
PMID:40235679
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11998079/
Abstract

Plasma cells serve a crucial role in the human immune system and are important in tumor progression. However, the specific role of plasma cell immune-related genes (PCIGs) in tumor progression remains unclear. Therefore, the present study aimed to establish a risk assessment model for patients with lung adenocarcinoma (LUAD) based on PCIGs. The data used in the present study were obtained from The Cancer Genome Atlas and the Gene Expression Omnibus databases. After identifying nine PCIGs, a risk assessment model was constructed and a nomogram was developed for predicting patient prognosis. To explore the molecular mechanism and clinical significance, gene set enrichment analysis (GSEA), tumor mutational burden (TMB) analysis, tumor microenvironment (TME) analysis and drug sensitivity prediction were performed. Furthermore, the accuracy of the model was validated using reverse transcription-quantitative PCR (RT-qPCR). The present study constructed a risk assessment model consisting of nine PCIGs. Kaplan-Meier survival curves indicated a worse prognosis in the high-risk subgroup (risk score ≥0.982) compared with that in the low-risk subgroup. The nomogram exhibited predictive value for survival prediction (area under the curve=0.727). GSEA enrichment analysis revealed enrichment of the focal adhesion and extracellular matrix-receptor interaction pathways in the high-risk group. Moreover, the high-risk group exhibited a higher TMB, as demonstrated by the TME analysis showing lower ESTIMATE scores. Drug sensitivity prediction facilitated potential drug selection. Subsequently, differential gene expression was validated in multiple LUAD cell lines using RT-qPCR. In conclusion, the risk assessment model based on nine PCIGs may be used to predict the prognosis and drug selection in patients with LUAD.

摘要

浆细胞在人体免疫系统中发挥着关键作用,并且在肿瘤进展过程中也很重要。然而,浆细胞免疫相关基因(PCIGs)在肿瘤进展中的具体作用仍不清楚。因此,本研究旨在基于PCIGs建立肺腺癌(LUAD)患者的风险评估模型。本研究中使用的数据来自癌症基因组图谱(The Cancer Genome Atlas)和基因表达综合数据库(Gene Expression Omnibus)。在鉴定出9个PCIGs后,构建了风险评估模型并开发了列线图以预测患者预后。为了探索分子机制和临床意义,进行了基因集富集分析(GSEA)、肿瘤突变负荷(TMB)分析、肿瘤微环境(TME)分析和药物敏感性预测。此外,使用逆转录定量PCR(RT-qPCR)验证了模型的准确性。本研究构建了一个由9个PCIGs组成的风险评估模型。Kaplan-Meier生存曲线表明,与低风险亚组相比,高风险亚组(风险评分≥0.982)的预后更差。列线图对生存预测具有预测价值(曲线下面积=0.727)。GSEA富集分析显示高风险组中粘着斑和细胞外基质-受体相互作用途径富集。此外,高风险组表现出更高的TMB,TME分析显示ESTIMATE评分较低证明了这一点。药物敏感性预测有助于潜在药物的选择。随后,使用RT-qPCR在多个LUAD细胞系中验证了差异基因表达。总之,基于9个PCIGs的风险评估模型可用于预测LUAD患者的预后和药物选择。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6407/11998079/3f41c199a413/ol-29-06-15017-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6407/11998079/a525087babd6/ol-29-06-15017-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6407/11998079/6e259fb12dcb/ol-29-06-15017-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6407/11998079/3f41c199a413/ol-29-06-15017-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6407/11998079/a525087babd6/ol-29-06-15017-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6407/11998079/6e259fb12dcb/ol-29-06-15017-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6407/11998079/3f41c199a413/ol-29-06-15017-g03.jpg

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本文引用的文献

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Cancer Commun (Lond). 2023 Jul;43(7):765-787. doi: 10.1002/cac2.12460. Epub 2023 Jun 29.
2
Identification of signature genes and drug candidates for primary plasma cell leukemia: An integrated system biology approach.原发性浆细胞白血病特征基因和药物候选物的鉴定:一种综合系统生物学方法。
Comput Biol Med. 2023 Aug;162:107090. doi: 10.1016/j.compbiomed.2023.107090. Epub 2023 May 29.
3
Lung cancer immunotherapy: progress, pitfalls, and promises.
肺癌免疫疗法:进展、陷阱和前景。
Mol Cancer. 2023 Feb 21;22(1):40. doi: 10.1186/s12943-023-01740-y.
4
IASLC Lung Cancer Staging Project: The New Database to Inform Revisions in the Ninth Edition of the TNM Classification of Lung Cancer.IASLC 肺癌分期项目:为第九版肺癌 TNM 分期分类修订提供新数据库。
J Thorac Oncol. 2023 May;18(5):564-575. doi: 10.1016/j.jtho.2023.01.088. Epub 2023 Feb 10.
5
Secreted proteins MDK, WFDC2, and CXCL14 as candidate biomarkers for early diagnosis of lung adenocarcinoma.分泌蛋白 MDK、WFDC2 和 CXCL14 作为肺腺癌早期诊断的候选生物标志物。
BMC Cancer. 2023 Jan 31;23(1):110. doi: 10.1186/s12885-023-10523-z.
6
T cell-related prognostic risk model and tumor immune environment modulation in lung adenocarcinoma based on single-cell and bulk RNA sequencing.基于单细胞和批量RNA测序的肺腺癌T细胞相关预后风险模型及肿瘤免疫环境调控
Comput Biol Med. 2023 Jan;152:106460. doi: 10.1016/j.compbiomed.2022.106460. Epub 2022 Dec 21.
7
Delineating the dynamic evolution from preneoplasia to invasive lung adenocarcinoma by integrating single-cell RNA sequencing and spatial transcriptomics.通过整合单细胞 RNA 测序和空间转录组学,描绘从癌前病变到浸润性肺腺癌的动态演变过程。
Exp Mol Med. 2022 Nov;54(11):2060-2076. doi: 10.1038/s12276-022-00896-9. Epub 2022 Nov 25.
8
The Single-Cell Immunogenomic Landscape of B and Plasma Cells in Early-Stage Lung Adenocarcinoma.早期肺腺癌中 B 细胞和浆细胞的单细胞免疫基因组图谱。
Cancer Discov. 2022 Nov 2;12(11):2626-2645. doi: 10.1158/2159-8290.CD-21-1658.
9
XBP1 impacts lung adenocarcinoma progression by promoting plasma cell adaptation to the tumor microenvironment.XBP1通过促进浆细胞适应肿瘤微环境来影响肺腺癌进展。
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10
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Int J Biol Sci. 2022 Jun 27;18(11):4275-4288. doi: 10.7150/ijbs.73275. eCollection 2022.