• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

MIPD:分子、成像与临床表型综合数据库。

MIPD: Molecules, Imagings, and Clinical Phenotype Integrated Database.

作者信息

Zhao Jiaojiao, Wu Min, Wan Meihua, Li Xue, Li Jie, Liu Qin, Xiong Minghao, Tu Mengjie, Zhou Jun, Li Shilin, Zhang Jie, Fu Jiangping, Zhang Yin, Zhao Chungang, Qin Litong, Yang Xue, Zhao Hong, Zhang Yan, Zeng Fanxin

机构信息

Department of Clinical Research Center, Sichuan Clinical Research Center for Medical Imaging, Dazhou Key Laboratory for Precision Cancer Therapy, Dazhou Key Laboratory for Artificial Intelligence and Medical Imaging, Dazhou Central Hospital, 56 Nan Yue Miao Street, Dazhou 635000, China.

Huaxi MR Research Center, Department of Radiology, West China Hospital of Sichuan University, 37 Guo Xue Xiang, Chengdu 610041, China.

出版信息

Database (Oxford). 2025 Apr 21;2025. doi: 10.1093/database/baaf029.

DOI:10.1093/database/baaf029
PMID:40257906
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12010968/
Abstract

Due to tumor heterogeneity, a subset of patients fails to benefit from current treatment strategies. However, an integrated analysis of imaging features, genetic molecules, and clinical phenotypes can characterize tumor heterogeneity, enabling the development of more personalized treatment approaches. Despite its potential, cross-modal databases remain underexplored. To address this gap, we established a comprehensive database encompassing 9965 genes, 5449 proteins, 1121 metabolites, 283 pathways, 854 imaging features, and 73 clinical factors from colorectal cancer patients. This database identifies significantly distinct molecules and imaging features associated with clinical phenotypes and provides survival analysis based on these features. Additionally, it offers genetic molecule annotations, comparative expression levels between tumor and normal tissues, imaging features linked to genetic molecules, and imaging-based models for predicting gene expression levels. Furthermore, the database highlights correlations between genetic molecules, clinical factors, and imaging features. In summary, we present MIPD (Molecules, Imaging, and Clinical Phenotype Correlation Database), a user-friendly, interactive, and specialized platform accessible at http://corgenerf.com. MIPD facilitates the interpretability of cross-modal data by providing query, browse, search, visualization, and download functionalities, thereby offering a valuable resource for advancing precision medicine in colorectal cancer. Database URL: http://corgenerf.

摘要

由于肿瘤异质性,一部分患者无法从当前的治疗策略中获益。然而,对成像特征、基因分子和临床表型进行综合分析可以表征肿瘤异质性,从而开发出更具个性化的治疗方法。尽管具有潜力,但跨模态数据库仍未得到充分探索。为了填补这一空白,我们建立了一个全面的数据库,涵盖了来自结直肠癌患者的9965个基因、5449种蛋白质、1121种代谢物、283条通路、854个成像特征和73个临床因素。该数据库识别出与临床表型相关的显著不同的分子和成像特征,并基于这些特征进行生存分析。此外,它还提供基因分子注释、肿瘤组织与正常组织之间的比较表达水平、与基因分子相关的成像特征以及用于预测基因表达水平的基于成像的模型。此外,该数据库突出了基因分子、临床因素和成像特征之间的相关性。总之,我们推出了MIPD(分子、成像和临床表型关联数据库),这是一个用户友好、交互式的专业平台,可通过http://corgenerf.com访问。MIPD通过提供查询、浏览、搜索、可视化和下载功能,促进了跨模态数据的可解释性,从而为推进结直肠癌的精准医学提供了宝贵的资源。数据库网址:http://corgenerf。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3fe/12010968/c67848995fa1/baaf029f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3fe/12010968/3269ddc1c203/baaf029f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3fe/12010968/19d5e5c4406a/baaf029f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3fe/12010968/c67848995fa1/baaf029f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3fe/12010968/3269ddc1c203/baaf029f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3fe/12010968/19d5e5c4406a/baaf029f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3fe/12010968/c67848995fa1/baaf029f3.jpg

相似文献

1
MIPD: Molecules, Imagings, and Clinical Phenotype Integrated Database.MIPD:分子、成像与临床表型综合数据库。
Database (Oxford). 2025 Apr 21;2025. doi: 10.1093/database/baaf029.
2
Advancing clinical genomics and precision medicine with GVViZ: FAIR bioinformatics platform for variable gene-disease annotation, visualization, and expression analysis.利用 GVViZ 推进临床基因组学和精准医学:用于可变基因-疾病注释、可视化和表达分析的 FAIR 生物信息学平台。
Hum Genomics. 2021 Jun 26;15(1):37. doi: 10.1186/s40246-021-00336-1.
3
IPCT: Integrated Pharmacogenomic Platform of Human Cancer Cell Lines and Tissues.IPCT:人癌细胞系和组织的综合药物基因组学平台。
Genes (Basel). 2019 Feb 22;10(2):171. doi: 10.3390/genes10020171.
4
ISTransbase: an online database for inhibitor and substrate of drug transporters.iTransBase:一个在线的药物转运体抑制剂和底物数据库。
Database (Oxford). 2024 Jun 29;2024. doi: 10.1093/database/baae053.
5
GeneCards Version 3: the human gene integrator.GeneCards 版本 3:人类基因综合数据库。
Database (Oxford). 2010 Aug 5;2010:baq020. doi: 10.1093/database/baq020.
6
GCGene: a gene resource for gastric cancer with literature evidence.GCGene:一个有文献证据支持的胃癌基因资源库。
Oncotarget. 2016 Jun 7;7(23):33983-93. doi: 10.18632/oncotarget.9030.
7
CoReCG: a comprehensive database of genes associated with colon-rectal cancer.CoReCG:一个与结直肠癌相关基因的综合数据库。
Database (Oxford). 2016 Apr 25;2016. doi: 10.1093/database/baw059. Print 2016.
8
HOFE: an interactive forensic entomological database.HOFE:一个交互式法医昆虫学数据库。
Database (Oxford). 2024 Jul 13;2024. doi: 10.1093/database/baae058.
9
Pathway Commons, a web resource for biological pathway data.Pathway Commons,一个用于生物通路数据的网络资源。
Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90. doi: 10.1093/nar/gkq1039. Epub 2010 Nov 10.
10
The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse.小鼠基因组数据库 (MGD):实验室小鼠遗传学和基因组学的综合资源。
Nucleic Acids Res. 2012 Jan;40(Database issue):D881-6. doi: 10.1093/nar/gkr974. Epub 2011 Nov 10.

本文引用的文献

1
CT Radiomics to Predict Macrotrabecular-Massive Subtype and Immune Status in Hepatocellular Carcinoma.CT 放射组学预测肝细胞癌大粱型-巨块型亚型和免疫状态。
Radiology. 2023 Apr;307(1):e221291. doi: 10.1148/radiol.221291. Epub 2022 Dec 13.
2
NPInter v5.0: ncRNA interaction database in a new era.NPInter v5.0:新时代的 ncRNA 相互作用数据库。
Nucleic Acids Res. 2023 Jan 6;51(D1):D232-D239. doi: 10.1093/nar/gkac1002.
3
LncRNA FIRRE functions as a tumor promoter by interaction with PTBP1 to stabilize BECN1 mRNA and facilitate autophagy.
长链非编码 RNA FIRRE 通过与 PTBP1 相互作用来促进肿瘤的发生,稳定 BECN1 mRNA 并促进自噬。
Cell Death Dis. 2022 Feb 2;13(2):98. doi: 10.1038/s41419-022-04509-1.
4
Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource.比较非癌组织中驱动癌症和体细胞进化的基因:癌症基因网络 (NCG) 资源的更新。
Genome Biol. 2022 Jan 26;23(1):35. doi: 10.1186/s13059-022-02607-z.
5
Deep learning radiomics model related with genomics phenotypes for lymph node metastasis prediction in colorectal cancer.深度学习放射组学模型与结直肠癌淋巴结转移预测的基因组表型相关。
Radiother Oncol. 2022 Feb;167:195-202. doi: 10.1016/j.radonc.2021.12.031. Epub 2021 Dec 27.
6
OncoDB: an interactive online database for analysis of gene expression and viral infection in cancer.OncoDB:一个交互式在线数据库,用于分析癌症中的基因表达和病毒感染。
Nucleic Acids Res. 2022 Jan 7;50(D1):D1334-D1339. doi: 10.1093/nar/gkab970.
7
Computed tomography-based radiomics decodes prognostic and molecular differences in interstitial lung disease related to systemic sclerosis.基于计算机断层扫描的放射组学解码与系统性硬化症相关的间质性肺疾病的预后和分子差异。
Eur Respir J. 2022 May 19;59(5). doi: 10.1183/13993003.04503-2020. Print 2022 May.
8
Biologic Pathways Underlying Prognostic Radiomics Phenotypes from Paired MRI and RNA Sequencing in Glioblastoma.胶质母细胞瘤配对 MRI 和 RNA 测序预后放射组学表型的生物学途径。
Radiology. 2021 Dec;301(3):654-663. doi: 10.1148/radiol.2021203281. Epub 2021 Sep 14.
9
A review in radiomics: Making personalized medicine a reality via routine imaging.放射组学综述:通过常规成像实现个体化医疗。
Med Res Rev. 2022 Jan;42(1):426-440. doi: 10.1002/med.21846. Epub 2021 Jul 26.
10
Circ3823 contributes to growth, metastasis and angiogenesis of colorectal cancer: involvement of miR-30c-5p/TCF7 axis.环状 RNA3823 通过 miR-30c-5p/TCF7 轴促进结直肠癌细胞的生长、转移和血管生成。
Mol Cancer. 2021 Jun 25;20(1):93. doi: 10.1186/s12943-021-01372-0.