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通过实验室X射线粉末衍射法测定替戈拉赞(()-4-((5,7-二氟色满-4-基)氧基)-1,2-二甲基-1-苯并咪唑-6-甲酰胺)多晶型物A和B的结构

Structure Determination of Tegoprazan(()-4-((5,7-difluorochroman-4-yl)oxy)-,,2-trimethyl-1-benzo[]imidazole-6-formamide) Polymorphs A and B by Laboratory X-Ray Powder Diffraction.

作者信息

Ryu Seah, Lee JooHo, Kim Jason, Yamaguchi Tokutaro

机构信息

J2Hbiotech Inc. Corp, #210, B dong, 142-10, Saneop-ro 156beon-gil, Gwonseon-gu, Suwon-si 16648, Gyeonggi-do, Republic of Korea.

出版信息

Molecules. 2025 Mar 30;30(7):1538. doi: 10.3390/molecules30071538.

Abstract

Tegoprazan is a potassium ion-competitive acid blocker (P-CAB) and a novel inhibitor of gastric acid secretion. The compound exists in two crystalline polymorphs, A and B, whose structures had not previously been reported. In this study, both polymorphs were analyzed by liquid- and solid-state NMR, revealing identical tautomeric states. Using this information, the crystal structures were determined from laboratory powder X-ray diffraction data by simulated annealing and Rietveld refinement. Both forms were found to crystallize in the monoclinic space group P2, with Z = 4 and two independent molecules in the asymmetric unit (Z' = 2). To assess the stability and reliability of the refined structures, we attempted geometry optimization and vibrational analysis using DFT-D methods. However, due to the high conformational complexity of Z' = 2 systems, these calculations failed to converge or produced imaginary frequencies. Instead, single-point energy calculations were performed on the refined models. The resulting relative energy differences, together with solubility data, van't Hoff enthalpies, and DSC profiles, consistently indicated that Polymorph A is more stable than Polymorph B. These results highlight the challenges of structure validation via DFT-D for complex molecular crystals and demonstrate the value of integrating experimental and computational approaches for polymorph characterization.

摘要

替戈拉赞是一种钾离子竞争性酸阻滞剂(P-CAB),也是一种新型胃酸分泌抑制剂。该化合物存在两种晶体多晶型物,A和B,其结构此前尚未见报道。在本研究中,通过液体和固态核磁共振对两种多晶型物进行了分析,揭示了相同的互变异构状态。利用这些信息,通过模拟退火和Rietveld精修从实验室粉末X射线衍射数据确定了晶体结构。发现两种晶型均在单斜空间群P2中结晶,Z = 4,不对称单元中有两个独立分子(Z' = 2)。为了评估精修结构的稳定性和可靠性,我们尝试使用DFT-D方法进行几何优化和振动分析。然而,由于Z' = 2体系的高构象复杂性,这些计算未能收敛或产生虚频。取而代之的是,对精修模型进行了单点能量计算。由此产生的相对能量差异,连同溶解度数据、范特霍夫焓和DSC曲线,一致表明多晶型物A比多晶型物B更稳定。这些结果突出了通过DFT-D对复杂分子晶体进行结构验证的挑战,并证明了整合实验和计算方法进行多晶型表征的价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4995/11990383/4eaaf5014aad/molecules-30-01538-g001.jpg

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