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利用计算机模拟分析对源自物种的抗癌肽进行研究。

Investigation of Anticancer Peptides Derived from Species Using In Silico Analysis.

作者信息

Wu Jixu, Zhang Xiuhua, Jin Yuting, Zhang Man, Yu Rongmin, Song Liyan, Liu Fei, Zhu Jianhua

机构信息

Biotechnological Institute of Chinese Materia Medica, Jinan University, Guangzhou 510632, China.

Shandong Engineering Research Center for Efficient Preparation and Application of Sugar and Sugar Complex, Shandong Academy of Pharmaceutical Science, Jinan 250101, China.

出版信息

Molecules. 2025 Apr 7;30(7):1640. doi: 10.3390/molecules30071640.

DOI:10.3390/molecules30071640
PMID:40286246
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11990805/
Abstract

This study employed an integrated in silico approach to identify and characterize anticancer peptides (ACPs) derived from species. Using a comprehensive bioinformatics pipeline (BIOPEP, ToxinPred, ProtParam, ChemDraw, SwissTargetPrediction, and I-TASSER), we screened hydrolyzed bioactive peptides from species, identifying seventeen novel peptide candidates. Subsequent in vitro validation revealed three peptides (KW, WQIWYK, KGKWQIWYKSL) with significant anticancer activity, demonstrating both high biosafety and clinical potential. Our findings highlight species proteins as a valuable source of therapeutic ACPs and establish bioinformatics as an efficient strategy for rapid discovery of bioactive peptides. This approach combines computational prediction with experimental validation, offering a robust framework for developing novel peptide-based therapeutics.

摘要

本研究采用综合的计算机模拟方法来鉴定和表征源自物种的抗癌肽(ACP)。通过全面的生物信息学流程(BIOPEP、ToxinPred、ProtParam、ChemDraw、SwissTargetPrediction和I-TASSER),我们从物种中筛选水解生物活性肽,鉴定出17种新型肽候选物。随后的体外验证揭示了三种具有显著抗癌活性的肽(KW、WQIWYK、KGKWQIWYKSL),证明了其高生物安全性和临床潜力。我们的研究结果突出了物种蛋白质作为治疗性ACP的宝贵来源,并确立了生物信息学作为快速发现生物活性肽的有效策略。这种方法将计算预测与实验验证相结合,为开发新型基于肽的疗法提供了一个强大的框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/0bb6051f8916/molecules-30-01640-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/eeb1bc384e95/molecules-30-01640-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/d8fd4a361586/molecules-30-01640-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/73b9ddb01792/molecules-30-01640-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/962bc0b2e77e/molecules-30-01640-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/511be5e492cf/molecules-30-01640-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/cef3e3ee8318/molecules-30-01640-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/c9ffd1e92692/molecules-30-01640-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/0bb6051f8916/molecules-30-01640-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/eeb1bc384e95/molecules-30-01640-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/d8fd4a361586/molecules-30-01640-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/73b9ddb01792/molecules-30-01640-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/962bc0b2e77e/molecules-30-01640-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/511be5e492cf/molecules-30-01640-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/cef3e3ee8318/molecules-30-01640-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/c9ffd1e92692/molecules-30-01640-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7584/11990805/0bb6051f8916/molecules-30-01640-g008.jpg

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本文引用的文献

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G protein-coupled receptor-targeted proteolysis-targeting chimeras in cancer therapeutics.癌症治疗中靶向G蛋白偶联受体的蛋白酶靶向嵌合体
Mol Pharmacol. 2025 Feb;107(2):100013. doi: 10.1016/j.molpha.2024.100013. Epub 2024 Dec 12.
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Targeting HER2 in solid tumors: Unveiling the structure and novel epitopes.靶向实体瘤中的 HER2:揭示结构和新型表位。
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Glycolysis, the sweet appetite of the tumor microenvironment.糖酵解,肿瘤微环境的甜蜜之需。
Cancer Lett. 2024 Sep 28;600:217156. doi: 10.1016/j.canlet.2024.217156. Epub 2024 Aug 8.
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ToxinPred 3.0: An improved method for predicting the toxicity of peptides.ToxinPred 3.0:一种改进的多肽毒性预测方法。
Comput Biol Med. 2024 Sep;179:108926. doi: 10.1016/j.compbiomed.2024.108926. Epub 2024 Jul 21.
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Preparation, bioactivities, and food industry applications of tuber and tuberous roots peptides: A review.块茎和块根肽的制备、生物活性及在食品工业中的应用:综述。
Food Chem. 2024 Oct 30;456:140027. doi: 10.1016/j.foodchem.2024.140027. Epub 2024 Jun 7.
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Advances in Research on the Activity Evaluation, Mechanism and Structure-Activity Relationships of Natural Antioxidant Peptides.天然抗氧化肽的活性评价、作用机制及构效关系研究进展
Antioxidants (Basel). 2024 Apr 17;13(4):479. doi: 10.3390/antiox13040479.
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The role of proteasomes in tumorigenesis.蛋白酶体在肿瘤发生中的作用。
Genes Dis. 2023 Aug 6;11(4):101070. doi: 10.1016/j.gendis.2023.06.037. eCollection 2024 Jul.
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Identification of Antagonistic Action of Pyrrolizidine Alkaloids in Muscarinic Acetylcholine Receptor M1 by Computational Target Prediction Analysis.通过计算靶点预测分析鉴定吡咯里西啶生物碱对毒蕈碱型乙酰胆碱受体M1的拮抗作用
Pharmaceuticals (Basel). 2024 Jan 8;17(1):80. doi: 10.3390/ph17010080.
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Tumor lipid metabolism: a mechanistic link between diet and cancer progression.肿瘤脂质代谢:饮食与癌症进展之间的机制联系。
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In vitro and in silico studies for the identification of anti-cancer and antibacterial peptides from camel milk protein hydrolysates.体外和计算机研究鉴定骆驼乳蛋白水解物中的抗癌和抗菌肽。
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