Lipshutz Sara E, Hibbins Mark S, Bentz Alexandra B, Buechlein Aaron M, Empson Tara A, George Elizabeth M, Hauber Mark E, Rusch Douglas B, Schelsky Wendy M, Thomas Quinn K, Torneo Samuel J, Turner Abbigail M, Wolf Sarah E, Woodruff Mary J, Hahn Matthew W, Rosvall Kimberly A
Department of Biology, Indiana University, Bloomington, IN, USA.
Department of Biology, Loyola University Chicago, Chicago, IL, USA.
Nat Ecol Evol. 2025 May;9(5):845-856. doi: 10.1038/s41559-025-02675-x. Epub 2025 Apr 28.
Uncovering the genomic bases of phenotypic adaptation is a major goal in biology, but this has been hard to achieve for complex behavioural traits. Here we leverage the repeated, independent evolution of obligate cavity nesting in birds to test the hypothesis that pressure to compete for a limited breeding resource has facilitated convergent evolution in behaviour, hormones and gene expression. We used an integrative approach, combining aggression assays in the field, testosterone measures and transcriptome-wide analyses of the brain in wild-captured females and males. Our experimental design compared species pairs across five avian families, each including one obligate cavity-nesting species and a related species with a more flexible nest strategy. We find behavioural convergence, with higher levels of territorial aggression in obligate cavity nesters, particularly among females. Across species, levels of testosterone in circulation were not associated with nest strategy nor aggression. Phylogenetic analyses of individual genes and co-regulated gene networks revealed more shared patterns of brain gene expression than expected by drift, although the scope of convergent gene expression evolution was limited to a small percentage of the genome. When comparing our results to other studies that did not use phylogenetic methods, we suggest that accounting for shared evolutionary history may reduce the number of genes inferred as convergently evolving. Altogether, we find that behavioural convergence in response to shared ecological pressures is associated with largely independent evolution of gene expression across different avian families, punctuated by a narrow set of convergently evolving genes.
揭示表型适应的基因组基础是生物学的一个主要目标,但对于复杂的行为特征来说,这一直很难实现。在这里,我们利用鸟类专性洞穴筑巢的反复、独立进化来检验这一假设,即争夺有限繁殖资源的压力促进了行为、激素和基因表达的趋同进化。我们采用了一种综合方法,结合野外攻击试验、睾酮测量以及对野生捕获的雌性和雄性鸟类大脑进行全转录组分析。我们的实验设计比较了五个鸟类家族中的物种对,每个家族都包括一个专性洞穴筑巢物种和一个巢策略更灵活的相关物种。我们发现了行为趋同现象,专性洞穴筑巢者,尤其是雌性,具有更高水平的领地攻击性。在不同物种中,循环中的睾酮水平与巢策略和攻击性均无关。对单个基因和共同调控基因网络的系统发育分析表明,大脑基因表达的共享模式比随机漂变预期的更多,尽管趋同基因表达进化的范围仅限于基因组的一小部分。当我们将结果与其他未使用系统发育方法的研究进行比较时,我们认为考虑共同的进化历史可能会减少被推断为趋同进化的基因数量。总体而言,我们发现,对共同生态压力的行为趋同与不同鸟类家族中基因表达的 largely 独立进化相关,其间穿插着一小部分趋同进化的基因。