Wu Yifan, Song Yang, Soto Jennifer, Hoffman Tyler, Lin Xiao, Zhang Aaron, Chen Siyu, Massad Ramzi N, Han Xiao, Qi Dongping, Yeh Kun-Wei, Fang Zhiwei, Eoh Joon, Gu Luo, Rowat Amy C, Gu Zhen, Li Song
Department of Bioengineering, University of California Los Angeles, Los Angeles, CA, 90095, USA.
Institute of Biomedical Engineering, West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, 610041, Chengdu, China.
Nat Commun. 2025 Apr 30;16(1):4054. doi: 10.1038/s41467-025-59190-7.
Extracellular matrices of living tissues exhibit viscoelastic properties, yet how these properties regulate chromatin and the epigenome remains unclear. Here, we show that viscoelastic substrates induce changes in nuclear architecture and epigenome, with more pronounced effects on softer surfaces. Fibroblasts on viscoelastic substrates display larger nuclei, lower chromatin compaction, and differential expression of distinct sets of genes related to the cytoskeleton and nuclear function, compared to those on elastic surfaces. Slow-relaxing viscoelastic substrates reduce lamin A/C expression and enhance nuclear remodeling. These structural changes are accompanied by a global increase in euchromatin marks and local increase in chromatin accessibility at cis-regulatory elements associated with neuronal and pluripotent genes. Consequently, viscoelastic substrates improve the reprogramming efficiency from fibroblasts into neurons and induced pluripotent stem cells. Collectively, our findings unravel the roles of matrix viscoelasticity in epigenetic regulation and cell reprogramming, with implications for designing smart materials for cell fate engineering.
活组织的细胞外基质具有粘弹性,然而这些特性如何调节染色质和表观基因组仍不清楚。在这里,我们表明粘弹性底物会诱导核结构和表观基因组的变化,对较软表面的影响更为明显。与弹性表面上的成纤维细胞相比,粘弹性底物上的成纤维细胞显示出更大的细胞核、更低的染色质压缩程度,以及与细胞骨架和核功能相关的不同基因集的差异表达。缓慢松弛的粘弹性底物会降低核纤层蛋白A/C的表达并增强核重塑。这些结构变化伴随着常染色质标记的整体增加以及与神经元和多能基因相关的顺式调控元件处染色质可及性的局部增加。因此,粘弹性底物提高了从成纤维细胞重编程为神经元和诱导多能干细胞的效率。总的来说,我们的研究结果揭示了基质粘弹性在表观遗传调控和细胞重编程中的作用,对设计用于细胞命运工程的智能材料具有启示意义。