• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

纳入患者特异性血小板钙信号神经网络模型的多尺度模拟预测了流动条件下不同的血栓形成结果。

Multiscale simulations that incorporate patient-specific neural network models of platelet calcium signaling predict diverse thrombotic outcomes under flow.

作者信息

Shankar Kaushik N, Sinno Talid, Diamond Scott L

机构信息

Department of Chemical and Biomolecular Engineering, Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.

出版信息

PLoS Comput Biol. 2025 May 6;21(5):e1013085. doi: 10.1371/journal.pcbi.1013085. eCollection 2025 May.

DOI:10.1371/journal.pcbi.1013085
PMID:40327670
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12080932/
Abstract

During thrombosis, platelets rapidly deposit and activate on the vessel wall, driving conditions such as myocardial infarction and stroke. The complexity of thrombus formation in pathological flow geometries, along with patient-specific pharmacological responses, presents an opportunity for computational modeling to help deliver novel diagnostic and therapeutic insights. In the present study, we employed a multiscale 3D computational model that incorporates unique donor-derived neural networks (NNs) trained with platelet calcium mobilization traces under combinatorial exposure to 6 agonists (n = 10 donors). The 3D model comprises four modules: a donor-specific NN model for platelet calcium mobilization, a lattice kinetic Monte Carlo solver for tracking platelet motion and bonding, a finite volume method solver for modeling soluble agonist release and convective-diffusive transport, and a lattice Boltzmann method solver for predicting the blood velocity field. Simulations were conducted for platelets from individual blood donors under venous and arterial flow conditions on a defined collagen surface, examining the effects of inhibiting ADP and TXA2, as well as the influence of nitric oxide and prostacyclin. The results reveal significant individual variability in platelet responses, influencing simulated thrombus growth dynamics and emphasizing the importance of personalized models for predicting thrombotic behavior. This approach enables consideration of patient-specific platelet signaling, drug responses, and vascular geometry for predicting thrombotic episodes, essential for advancing precision medicine and improving patient outcomes in thrombotic conditions.

摘要

在血栓形成过程中,血小板会迅速沉积并在血管壁上激活,引发心肌梗死和中风等病症。病理血流几何形状中血栓形成的复杂性,以及患者特异性的药理反应,为计算建模提供了契机,有助于提供新颖的诊断和治疗见解。在本研究中,我们采用了一种多尺度三维计算模型,该模型纳入了独特的供体衍生神经网络(NNs),这些神经网络是在组合暴露于6种激动剂(n = 10个供体)的情况下,用血小板钙动员轨迹进行训练的。该三维模型包括四个模块:用于血小板钙动员的供体特异性神经网络模型、用于跟踪血小板运动和结合的格子动力学蒙特卡罗求解器、用于模拟可溶性激动剂释放和对流扩散传输的有限体积法求解器,以及用于预测血流速度场的格子玻尔兹曼法求解器。在定义的胶原蛋白表面上,针对个体献血者的血小板在静脉和动脉血流条件下进行了模拟,研究了抑制二磷酸腺苷(ADP)和血栓素A2(TXA2)的效果,以及一氧化氮和前列环素的影响。结果揭示了血小板反应中显著的个体差异,影响了模拟血栓生长动力学,并强调了个性化模型对预测血栓形成行为的重要性。这种方法能够考虑患者特异性的血小板信号传导、药物反应和血管几何形状来预测血栓形成事件,这对于推进精准医学和改善血栓形成病症患者的预后至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/9b11b0117c50/pcbi.1013085.g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/d30c24b184e8/pcbi.1013085.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/a8162776b1d4/pcbi.1013085.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/1b9586ae8137/pcbi.1013085.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/9fa646c8b37f/pcbi.1013085.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/5a67eda61333/pcbi.1013085.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/8e78a82aee01/pcbi.1013085.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/32fc0ab889c3/pcbi.1013085.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/b455bab1544f/pcbi.1013085.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/7249aaad73e9/pcbi.1013085.g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/9b11b0117c50/pcbi.1013085.g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/d30c24b184e8/pcbi.1013085.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/a8162776b1d4/pcbi.1013085.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/1b9586ae8137/pcbi.1013085.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/9fa646c8b37f/pcbi.1013085.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/5a67eda61333/pcbi.1013085.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/8e78a82aee01/pcbi.1013085.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/32fc0ab889c3/pcbi.1013085.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/b455bab1544f/pcbi.1013085.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/7249aaad73e9/pcbi.1013085.g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/110f/12080932/9b11b0117c50/pcbi.1013085.g010.jpg

相似文献

1
Multiscale simulations that incorporate patient-specific neural network models of platelet calcium signaling predict diverse thrombotic outcomes under flow.纳入患者特异性血小板钙信号神经网络模型的多尺度模拟预测了流动条件下不同的血栓形成结果。
PLoS Comput Biol. 2025 May 6;21(5):e1013085. doi: 10.1371/journal.pcbi.1013085. eCollection 2025 May.
2
A three-dimensional multiscale model for the prediction of thrombus growth under flow with single-platelet resolution.一种具有单细胞分辨率的预测流动下单血小板血栓生长的三维多尺度模型。
PLoS Comput Biol. 2022 Jan 28;18(1):e1009850. doi: 10.1371/journal.pcbi.1009850. eCollection 2022 Jan.
3
Systems biology of platelet-vessel wall interactions.血小板-血管壁相互作用的系统生物学。
Front Physiol. 2013 Aug 26;4:229. doi: 10.3389/fphys.2013.00229. eCollection 2013.
4
Multiscale simulation of thrombus growth and vessel occlusion triggered by collagen/tissue factor using a data-driven model of combinatorial platelet signalling.使用组合血小板信号的数据驱动模型对由胶原蛋白/组织因子触发的血栓生长和血管阻塞进行多尺度模拟。
Math Med Biol. 2017 Dec 11;34(4):523-546. doi: 10.1093/imammb/dqw015.
5
Multiscale prediction of patient-specific platelet function under flow.多尺度预测流动条件下的个体血小板功能。
Blood. 2012 Jul 5;120(1):190-8. doi: 10.1182/blood-2011-10-388140. Epub 2012 Apr 18.
6
A human platelet calcium calculator trained by pairwise agonist scanning.通过成对激动剂扫描训练的人体血小板钙计算器。
PLoS Comput Biol. 2015 Feb 27;11(2):e1004118. doi: 10.1371/journal.pcbi.1004118. eCollection 2015 Feb.
7
Novel Stenotic Microchannels to Study Thrombus Formation in Shear Gradients: Influence of Shear Forces and Human Platelet-Related Factors.新型狭窄微通道用于研究切变梯度下的血栓形成:切变力和与人类血小板相关因素的影响。
Int J Mol Sci. 2019 Jun 18;20(12):2967. doi: 10.3390/ijms20122967.
8
A continuum model for platelet transport in flowing blood based on direct numerical simulations of cellular blood flow.基于细胞血流直接数值模拟的流动血液中血小板运输的连续介质模型。
Ann Biomed Eng. 2015 Jun;43(6):1410-21. doi: 10.1007/s10439-014-1168-4. Epub 2014 Oct 28.
9
Continuum modeling of thrombus formation and growth under different shear rates.不同切变率下血栓形成和生长的连续体建模。
J Biomech. 2022 Feb;132:110915. doi: 10.1016/j.jbiomech.2021.110915. Epub 2022 Jan 4.
10
Multiscale systems biology and physics of thrombosis under flow.多尺度系统生物学和流动条件下的血栓物理学。
Ann Biomed Eng. 2012 Nov;40(11):2355-64. doi: 10.1007/s10439-012-0557-9. Epub 2012 Mar 30.

本文引用的文献

1
A computational investigation of occlusive arterial thrombosis.闭塞性动脉血栓形成的计算研究。
Biomech Model Mechanobiol. 2024 Feb;23(1):157-178. doi: 10.1007/s10237-023-01765-8. Epub 2023 Sep 13.
2
Decoding thrombosis through code: a review of computational models.解码血栓形成的密码:计算模型综述。
J Thromb Haemost. 2024 Jan;22(1):35-47. doi: 10.1016/j.jtha.2023.08.021. Epub 2023 Aug 30.
3
A Multiscale Model for Shear-Mediated Platelet Adhesion Dynamics: Correlating In Silico with In Vitro Results.一种用于剪切介导的血小板黏附动力学的多尺度模型:体内与体外结果的相关性。
Ann Biomed Eng. 2023 May;51(5):1094-1105. doi: 10.1007/s10439-023-03193-2. Epub 2023 Apr 5.
4
von Willebrand factor unfolding mediates platelet deposition in a model of high-shear thrombosis.von Willebrand 因子展开介导高切变血栓形成模型中的血小板沉积。
Biophys J. 2022 Nov 1;121(21):4033-4047. doi: 10.1016/j.bpj.2022.09.040. Epub 2022 Oct 3.
5
Automated generation of 0D and 1D reduced-order models of patient-specific blood flow.患者特异性血流的 0D 和 1D 降阶模型的自动生成。
Int J Numer Method Biomed Eng. 2022 Oct;38(10):e3639. doi: 10.1002/cnm.3639. Epub 2022 Aug 14.
6
A three-dimensional multiscale model for the prediction of thrombus growth under flow with single-platelet resolution.一种具有单细胞分辨率的预测流动下单血小板血栓生长的三维多尺度模型。
PLoS Comput Biol. 2022 Jan 28;18(1):e1009850. doi: 10.1371/journal.pcbi.1009850. eCollection 2022 Jan.
7
Continuum modeling of thrombus formation and growth under different shear rates.不同切变率下血栓形成和生长的连续体建模。
J Biomech. 2022 Feb;132:110915. doi: 10.1016/j.jbiomech.2021.110915. Epub 2022 Jan 4.
8
Thrombosis and Hemodynamics: external and intrathrombus gradients.血栓形成与血流动力学:外部及血栓内梯度
Curr Opin Biomed Eng. 2021 Sep;19. doi: 10.1016/j.cobme.2021.100316. Epub 2021 Jun 26.
9
The Effects of Micro-vessel Curvature Induced Elongational Flows on Platelet Adhesion.微血管弯曲诱导的拉伸流对血小板黏附的影响。
Ann Biomed Eng. 2021 Dec;49(12):3609-3620. doi: 10.1007/s10439-021-02870-4. Epub 2021 Oct 19.
10
A 1D-3D Hybrid Model of Patient-Specific Coronary Hemodynamics.基于患者冠状动脉血流动力学的 1D-3D 混合模型
Cardiovasc Eng Technol. 2022 Apr;13(2):331-342. doi: 10.1007/s13239-021-00580-5. Epub 2021 Sep 30.