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工程化的耐盐弧菌对复杂有机污染物的生物修复

Bioremediation of complex organic pollutants by engineered Vibrio natriegens.

作者信息

Su Cong, Cui Haotian, Wang Weiwei, Liu Yong, Cheng Zhenyu, Wang Chen, Yang Mengqiao, Qu Liwen, Li Ye, Cai Yuejin, He Siyang, Zheng Jiaxin, Zhao Pingping, Xu Ping, Dai Junbiao, Tang Hongzhi

机构信息

Shenzhen Key Laboratory of Synthetic Genomics, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.

State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, People's Republic of China.

出版信息

Nature. 2025 May 7. doi: 10.1038/s41586-025-08947-7.

Abstract

Industrial wastewater, petroleum pollution and plastic contamination are significant threats to global marine biosecurity because of their toxic, mutagenic and persistent nature. The use of microorganisms in bioremediation has been constrained by the complexity of organic pollutants and limited tolerance to saline stress. In this study, we used synthetic biology to engineer Vibrio natriegens into a strain capable of bioremediating complex organic pollutants in saline wastewater and soils. The competence master regulator gene tfoX was inserted into chromosome 1 of the V. natriegens strain Vmax and overexpressed to enhance DNA uptake and integration. Degradation gene clusters were chemically synthesized and assembled in yeast. We developed a genome engineering method (iterative natural transformation based on Vmax with amplified tfoX effect) to transfer five gene clusters (43 kb total) into Vmax. The engineered strain has the ability to bioremediate five organic pollutants (biphenyl, phenol, naphthalene, dibenzofuran and toluene) covering a broad substrate range, from monocyclic to multicyclic compounds, in industrial wastewater samples from a chlor-alkali plant and a petroleum refinery.

摘要

工业废水、石油污染和塑料污染因其毒性、致突变性和持久性,对全球海洋生物安全构成重大威胁。微生物在生物修复中的应用受到有机污染物复杂性和对盐胁迫耐受性有限的限制。在本研究中,我们利用合成生物学将纳氏弧菌改造为一种能够对含盐废水和土壤中的复杂有机污染物进行生物修复的菌株。将感受态主调控基因tfoX插入纳氏弧菌菌株Vmax的1号染色体并过表达,以增强DNA摄取和整合。降解基因簇在酵母中进行化学合成和组装。我们开发了一种基因组工程方法(基于具有增强tfoX效应的Vmax的迭代自然转化),将五个基因簇(共43 kb)转入Vmax。该工程菌株能够对来自氯碱厂和炼油厂的工业废水样品中的五种有机污染物(联苯、苯酚、萘、二苯并呋喃和甲苯)进行生物修复,这些污染物涵盖了从单环到多环化合物的广泛底物范围。

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