Unlu Sezin, Uskudar Guclu Aylin
Faculty of Medicine, Department of Medical Microbiology, Baskent University, Ankara, Türkiye.
Int Microbiol. 2025 May 8. doi: 10.1007/s10123-025-00669-0.
Multi-drug-resistant (MDR) Pseudomonas aeruginosa is an important pathogen that poses a critical threat due to its metallo-beta-lactamase (MBL)-mediated carbapenem resistance and biofilm-forming ability, making bacterial treatment very complicated and requiring alternative strategies. Bacteriophages are promising alternatives; however, the discovery of novel phages targeting MDR strains remains urgent. In this study, Pseudomonas phage Baskent_P4_1, a novel virulent siphovirus that infects clinical MDR P. aeruginosa isolates, was isolated from wastewater and characterized comprehensively. Its efficacy was tested against biofilm-forming, MDR isolates with MBL activity by spot test and efficiency of plating (EOP). Biological characterization showed that phage Baskent_P4_1 is stable at pH 4-10 and temperatures up to 50 °C, while its stability decreases >60 °C temperature. It has a short latent period of 10 min and a high burst size of 253 phages per cell. The phage lysed 40% of the MDR P. aeruginosa isolates tested, including strong biofilm producers. In vitro assays showed significant biofilm inhibition (48.8% reduction at 10⁹ PFU/mL) and degradation of pre-formed biofilms. Transmission electron microscopy (TEM) revealed an icosahedral head (70 nm) and a long non-contractile tail (150 nm). Whole genome sequencing by Illumina demonstrated a linear dsDNA genome of 41.947 bp (62.8% GC content) with 53 predicted coding sequences. No virulence factors, antibiotic resistance genes, or tRNAs were detected, thus ensuring therapeutic safety. Along with phylogenetic and vConTACT2 analysis, these results suggested that phage Baskent_P4_1 belongs to a new genus, which was proposed here as the genus Angoravirus with three other species. Genomic analysis identified hydrolases (ORF 13/14) and 7-deazaguanine modification enzymes (ORF 46/47) that may contribute to host lysis and evasion of bacterial defenses. These findings highlight Baskent_P4_1's potential as a therapeutic candidate against MDR P. aeruginosa infections. The study underscores the importance of expanding phage diversity libraries and provides a framework for characterizing novel phages to combat antimicrobial resistance.
多重耐药(MDR)铜绿假单胞菌是一种重要的病原体,因其金属β-内酰胺酶(MBL)介导的碳青霉烯耐药性和生物膜形成能力而构成严重威胁,这使得细菌治疗非常复杂,需要采取替代策略。噬菌体是很有前景的替代方案;然而,发现针对MDR菌株的新型噬菌体仍然迫在眉睫。在本研究中,从废水中分离出一种新型烈性肌尾噬菌体——铜绿假单胞菌噬菌体Baskent_P4_1,它可感染临床MDR铜绿假单胞菌分离株,并对其进行了全面表征。通过点滴试验和平板接种效率(EOP)测试了其对具有MBL活性的生物膜形成MDR分离株的疗效。生物学特性表明,噬菌体Baskent_P4_1在pH 4-10和高达50°C的温度下稳定,而在>60°C的温度下其稳定性降低。它的潜伏期短,为10分钟,每个细胞的爆发量高,为253个噬菌体。该噬菌体裂解了40%的测试MDR铜绿假单胞菌分离株,包括强生物膜产生菌。体外试验显示出显著的生物膜抑制作用(在10⁹ PFU/mL时减少48.8%)和对预先形成的生物膜的降解作用。透射电子显微镜(TEM)显示有一个二十面体头部(70纳米)和一条长的非收缩性尾部(150纳米)。通过Illumina进行的全基因组测序显示有一个41947 bp的线性双链DNA基因组(GC含量为62.8%),有53个预测的编码序列。未检测到毒力因子、抗生素抗性基因或tRNA,从而确保了治疗安全性。连同系统发育分析和vConTACT2分析,这些结果表明噬菌体Baskent_P4_1属于一个新属,在此提议将其与其他三个物种一起归为安哥拉病毒属。基因组分析确定了可能有助于宿主裂解和逃避细菌防御的水解酶(ORF 13/14)和7-脱氮鸟嘌呤修饰酶(ORF 46/47)。这些发现突出了Baskent_P4_1作为抗MDR铜绿假单胞菌感染治疗候选物的潜力。该研究强调了扩大噬菌体多样性文库的重要性,并为表征新型噬菌体以对抗抗菌药物耐药性提供了一个框架。