Lin Shih-Sen, Hsu Pei-Sung, Lin Ying-Chu, You Jie-Yu, Shih Yung-Leun, Lai Hung-Chih
Division of Chest Medicine, Department of Internal Medicine, Shin Kong Wu Ho-Su Memorial Hospital, Taipei 111045, Taiwan.
Department of Pulmonology Medicine, Shin Kong Wu Ho-Su Memorial Hospital, Taipei 111045, Taiwan.
Diagnostics (Basel). 2025 Apr 25;15(9):1094. doi: 10.3390/diagnostics15091094.
: Lung cancer continues to be one of the most fatal malignancies globally. Uncovering differentially expressed genes (DEGs) is crucial for advancing our understanding of tumor mechanisms and discovering new therapeutic targets. This study sought to identify key genes linked to prognosis and immune infiltration in lung cancer through the analysis of public gene expression datasets. : We examined three microarray datasets from the Gene Expression Omnibus (GSE10072, GSE33356, and GSE18842) to detect DEGs between tumor and normal lung tissues. Functional enrichment was performed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses to interpret the biological relevance of these genes. Protein-protein interaction (PPI) networks were constructed via STRING and visualized using Cytoscape to screen for central hub genes. The prognostic implications of the hub genes were investigated using Kaplan-Meier Plotter and TIMER2.0 based on data from The Cancer Genome Atlas (TCGA). PECAM1 expression levels and its relationship with immune cell infiltration were further explored using UCSC Xena. : A total of 477 DEGs were consistently identified across all three datasets. Among the top 10 down-regulated hub genes, PECAM1 was significantly reduced in tumor tissues. Lower PECAM1 expression was positively associated with better first-progression survival (FPS) in lung cancer patients. This gene was particularly suppressed in lung adenocarcinoma (LUAD) and showed strong correlations with immune cell infiltration. Co-expression analysis revealed that genes linked to PECAM1 are involved in immune-related pathways. : Our findings highlight PECAM1 as a potential prognostic biomarker in lung cancer, especially in LUAD. Its association with immune infiltration and patient survival supports its possible utility in early detection and as a candidate for immunotherapy development.
肺癌仍然是全球最致命的恶性肿瘤之一。揭示差异表达基因(DEGs)对于加深我们对肿瘤机制的理解和发现新的治疗靶点至关重要。本研究旨在通过分析公共基因表达数据集,确定与肺癌预后和免疫浸润相关的关键基因。
我们检查了来自基因表达综合数据库(GSE10072、GSE33356和GSE18842)的三个微阵列数据集,以检测肿瘤组织与正常肺组织之间的差异表达基因。使用基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路分析进行功能富集,以解释这些基因的生物学相关性。通过STRING构建蛋白质-蛋白质相互作用(PPI)网络,并使用Cytoscape进行可视化,以筛选中心枢纽基因。基于癌症基因组图谱(TCGA)的数据,使用Kaplan-Meier Plotter和TIMER2.0研究枢纽基因的预后意义。使用UCSC Xena进一步探索PECAM1的表达水平及其与免疫细胞浸润的关系。
在所有三个数据集中共一致鉴定出477个差异表达基因。在前10个下调的枢纽基因中,PECAM1在肿瘤组织中显著降低。较低的PECAM1表达与肺癌患者较好的首次进展生存期(FPS)呈正相关。该基因在肺腺癌(LUAD)中尤其受到抑制,并与免疫细胞浸润密切相关。共表达分析表明,与PECAM1相关的基因参与免疫相关通路。
我们的研究结果突出了PECAM1作为肺癌,尤其是肺腺癌潜在的预后生物标志物。它与免疫浸润和患者生存的关联支持了其在早期检测中的可能效用,以及作为免疫治疗开发候选物的可能性。