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N-硝基甘氨酸生物合成中通过一种隐秘的非核糖体肽合成酶依赖性策略形成硝胺

Nitramine Formation via a Cryptic Non-Ribosomal Peptide Synthetase-Dependent Strategy in N-Nitroglycine Biosynthesis.

作者信息

Wang Yun, Zhang Jiangtao, Shi Ran, Zhou Siyuan, Chen Shigui, Li Ruofei, Huang Wei, He Hai-Yan

机构信息

NHC Key Laboratory of Biotechnology for Microbial Drugs, State Key Laboratory of Bioactive Substance & Function of Natural Medicines, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 100050, China.

The Institute for Advanced Studies, Hubei Key Lab on Organic and Polymeric Opto-Electronic Materials, Wuhan University, Wuhan, Hubei, 430072, China.

出版信息

Angew Chem Int Ed Engl. 2025 Jul;64(29):e202507866. doi: 10.1002/anie.202507866. Epub 2025 May 20.

Abstract

N-nitroglycine (NNG), a rare nitramine natural compound, is the only known example produced by streptomyces strains. In this study, we clarified that NNG biosynthesis originates from glycine and l-lysine and elucidated its biosynthetic gene cluster (BGC) nng. This cluster shares high homology with the recently reported BGCs of diazo compound azaserine. In vivo and in vitro results have indicated NNG biosynthetic pathway involves hydrazine and hydrazone generation, with a non-heme diiron N-oxygenase and a cytochrome P450 responsible for forming the nitramine structure. Furthermore, although NNG lacks a serine unit in the structure, its biosynthesis still requires the incorporation of a serine attached to the hydrazone intermediate by non-ribosomal peptide synthetase (NRPS), similar to the azaserine pathway, and two hydrolases are putatively involved in thioester hydrolysis and serine removal, respectively. This study, along with comparisons to azaserine biosynthesis, not only paves the way for the discovery of new nitramine and diazo compounds by genome mining but also highlights the potential for uncovering novel enzymes and chemistry involved in hydrazone oxidation.

摘要

N-硝基甘氨酸(NNG)是一种罕见的硝胺天然化合物,是已知由链霉菌菌株产生的唯一实例。在本研究中,我们阐明了NNG的生物合成起源于甘氨酸和L-赖氨酸,并阐明了其生物合成基因簇(BGC)nng。该基因簇与最近报道的重氮化合物偶氮丝氨酸的BGC具有高度同源性。体内和体外结果表明,NNG生物合成途径涉及肼和腙的生成,其中一种非血红素双铁N-加氧酶和一种细胞色素P450负责形成硝胺结构。此外,尽管NNG在结构上缺乏丝氨酸单元,但其生物合成仍需要非核糖体肽合成酶(NRPS)将与腙中间体相连的丝氨酸掺入,这与偶氮丝氨酸途径类似,并且推测有两种水解酶分别参与硫酯水解和丝氨酸去除。这项研究以及与偶氮丝氨酸生物合成的比较,不仅为通过基因组挖掘发现新的硝胺和重氮化合物铺平了道路,还突出了揭示参与腙氧化的新酶和化学反应的潜力。

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