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两种硫胺素二磷酸依赖性酶的结构见解及其在碳-碳键合反应中的合成应用。

Structural insights into two thiamine diphosphate-dependent enzymes and their synthetic applications in carbon-carbon linkage reactions.

作者信息

Liu Tan, Wang Guiyang, Yu Jiahui, Li Mengyuan, Peng Tianbo, Wang Jie, Li Houhua, Su Xiao-Dong, Jiang Changtao, Ye Min, Yang Donghui, Ma Ming

机构信息

State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing, China.

State Key Laboratory of Gene Function and Modulation Research, School of Life Sciences, Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, China.

出版信息

Nat Chem. 2025 May 14. doi: 10.1038/s41557-025-01822-y.

DOI:10.1038/s41557-025-01822-y
PMID:40369129
Abstract

The α-hydroxy-β-keto acid synthases are thiamine diphosphate-dependent enzymes catalysing carbon-carbon linkage reactions in the biosynthesis of primary metabolites and various secondary metabolites. However, the substrate selectivity and catalytic stereoselectivity of α-hydroxy-β-keto acid synthases are poorly understood, greatly hindering their synthetic application in generating diverse carbon frameworks. We here report the discovery of two new α-hydroxy-β-keto acid synthases CsmA and BbmA, which show different substrate selectivities in catalysing carbon-carbon coupling reactions between two β-keto acids. Four crystal structures of CsmA or BbmA complexed with thiamine diphosphate and their substrates were determined, clearly revealing their structural bases of substrate selectivity and catalytic stereoselectivity. Substrate scope expansion enables us to generate 120 α-hydroxy-β-keto acids together with 240 NaBH-reduction products. Furthermore, we applied CsmA and BbmA into enzymatic total synthesis, generating 36 γ-butyrolactone-containing furanolides. These results provide new structural insights into the catalyses of α-hydroxy-β-keto acid synthases and highlight their great potential in carboligation catalysis and synthetic applications.

摘要

α-羟基-β-酮酸合酶是依赖硫胺素二磷酸的酶,催化初级代谢产物和各种次级代谢产物生物合成中的碳-碳连接反应。然而,人们对α-羟基-β-酮酸合酶的底物选择性和催化立体选择性了解甚少,这极大地阻碍了它们在生成多样碳骨架方面的合成应用。我们在此报告发现了两种新的α-羟基-β-酮酸合酶CsmA和BbmA,它们在催化两个β-酮酸之间的碳-碳偶联反应中表现出不同的底物选择性。测定了CsmA或BbmA与硫胺素二磷酸及其底物复合物的四个晶体结构,清楚地揭示了它们底物选择性和催化立体选择性的结构基础。底物范围的扩展使我们能够一起生成120种α-羟基-β-酮酸以及240种NaBH还原产物。此外,我们将CsmA和BbmA应用于酶促全合成,生成了36种含γ-丁内酯的呋喃内酯。这些结果为α-羟基-β-酮酸合酶的催化作用提供了新的结构见解,并突出了它们在碳连接催化和合成应用中的巨大潜力。

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