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通过定向进化扩展生物传感器对左旋肉碱的动态响应范围和操作范围。

Extending dynamic and operational range of the biosensor responding to l-carnitine by directed evolution.

作者信息

Li Tingting, Dong Huina, Li Jinlong, Wang Huiying, Pu Chunxiang, Chen Siyu, Yang Zhiying, Ren Xinyi, Liu Xuan, Jin Zhaoxia, Zhang Dawei

机构信息

School of Biological Engineering, Dalian Polytechnic University, Dalian, China.

Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.

出版信息

Synth Syst Biotechnol. 2025 Apr 22;10(3):897-906. doi: 10.1016/j.synbio.2025.04.012. eCollection 2025 Sep.

Abstract

l-carnitine is a quaternary amine compound essential for eukaryotic metabolism. It is mainly involved in the oxidative decomposition of medium-and long-chain fatty acids and provides energy for the body. Therefore, it is widely used in health care and food additives. As a pivotal transcriptional activator of l-carnitine metabolism, CaiF is notably activated by crotonobetainyl-CoA, a key intermediate product in the carnitine metabolic pathway. Capitalizing on this mechanism, a sophisticated biosensor was ingeniously developed. Nevertheless, it is worth mentioning that the biosensor currently exhibits a relatively restricted detection range, which results in some specific limitations in practical application scenarios. In this paper, we constructed a biosensor based on CaiF and developed a strategy for modifying this biosensor. The structural configuration of CaiF was formulated by computer-aided design, and the DNA binding site was simulated, which was verified by alanine scanning. Functional Diversity-Oriented Volume-Conservative Substitution Strategy of the key sites of CaiF was conducted to extend the dynamic range of the biosensor. The biosensor based on CaiF, which exhibited a considerably expanded concentration response range, from 10 mM-10 mM, was obtained. The response range was 1000-fold wider and the output signal intensity was 3.3-fold higher to that of the control biosensor. These variants may have great value in improving the l-carnitine production process.

摘要

左旋肉碱是一种对真核生物代谢至关重要的季铵化合物。它主要参与中长链脂肪酸的氧化分解,为身体提供能量。因此,它被广泛用于保健品和食品添加剂中。作为左旋肉碱代谢的关键转录激活因子,CaiF 可被巴豆甜菜碱辅酶 A(肉碱代谢途径中的关键中间产物)显著激活。基于这一机制,人们巧妙地开发了一种精密的生物传感器。然而,值得一提的是,目前该生物传感器的检测范围相对有限,这在实际应用场景中导致了一些特定的局限性。在本文中,我们构建了一种基于 CaiF 的生物传感器,并开发了一种对该生物传感器进行修饰的策略。通过计算机辅助设计确定了 CaiF 的结构构型,并模拟了 DNA 结合位点,通过丙氨酸扫描进行了验证。对 CaiF 的关键位点进行了面向功能多样性的体积保守替换策略,以扩展生物传感器的动态范围。获得了基于 CaiF 的生物传感器,其浓度响应范围显著扩大,从 10 mM 到 10 mM。响应范围比对照生物传感器宽 1000 倍,输出信号强度高 3.3 倍。这些变体在改善左旋肉碱生产过程中可能具有重要价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a47f/12083890/191f5e2e9c96/gr1.jpg

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