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CRISPR-dCas12a 介导的遗传回路级联用于多重途径优化。

CRISPR-dCas12a-mediated genetic circuit cascades for multiplexed pathway optimization.

机构信息

Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China.

Science Center for Future Foods, Jiangnan University, Wuxi, China.

出版信息

Nat Chem Biol. 2023 Mar;19(3):367-377. doi: 10.1038/s41589-022-01230-0. Epub 2023 Jan 16.

Abstract

The production efficiency of microbial cell factories is sometimes limited by the lack of effective methods to regulate multiple targets in a coordinated manner. Here taking the biosynthesis of glucosamine-6-phosphate (GlcN6P) in Bacillus subtilis as an example, a 'design-build-test-learn' framework was proposed to achieve efficient multiplexed optimization of metabolic pathways. A platform strain was built to carry biosensor signal-amplifying circuits and two genetic regulation circuits. Then, a synthetic CRISPR RNA array blend for boosting and leading (ScrABBLE) device was integrated into the platform strain, which generated 5,184 combinatorial assemblies targeting three genes. The best GlcN6P producer was screened and engineered for the synthesis of valuable pharmaceuticals N-acetylglucosamine and N-acetylmannosamine. The N-acetylglucosamine titer reached 183.9 g liter in a 15-liter bioreactor. In addition, the potential generic application of the ScrABBLE device was also verified using three fluorescent proteins as a case study.

摘要

微生物细胞工厂的生产效率有时受到缺乏有效方法来协调调节多个目标的限制。以枯草芽孢杆菌中葡萄糖胺-6-磷酸(GlcN6P)的生物合成为例,提出了一种“设计-构建-测试-学习”框架,以实现代谢途径的高效多路复用优化。构建了一个平台菌株,携带生物传感器信号放大回路和两个遗传调控回路。然后,将一个用于增强和引导(ScrABBLE)的合成 CRISPR RNA 阵列混合物整合到该平台菌株中,针对三个基因生成了 5184 种组合组装。筛选和工程化最佳的 GlcN6P 生产菌株,用于合成有价值的药物 N-乙酰葡萄糖胺和 N-乙酰甘露糖胺。在 15 升生物反应器中,N-乙酰葡萄糖胺的产量达到 183.9g/L。此外,还通过三个荧光蛋白作为案例研究验证了 ScrABBLE 装置的潜在通用应用。

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