Vivekaa A, Nellore Jayshree, Sunkar Swetha
Department of Bioinformatics, Sathyabama Institute of Science and Technology, Chennai, Tamil Nadu, India.
Department of Biotechnology, Sathyabama Institute of Science and Technology, Chennai, Tamil Nadu, India.
Funct Integr Genomics. 2025 May 28;25(1):110. doi: 10.1007/s10142-025-01621-1.
Zebrafish (Danio rerio) have become a valuable model in biomedical research due to their genetic similarity to humans, rapid development, and suitability for high-throughput studies. Metabolomic analyses in zebrafish provide critical insights into the biochemical pathways underlying health and disease. This review explores the applications of metabolomics in zebrafish research, highlighting its contributions to understanding embryonic development, tuberculosis, neurodegenerative disorders such as Alzheimer's disease, obesity-related metabolic dysfunction, and drug-induced toxicity through a thorough literature review. Zebrafish metabolomics reveals dynamic metabolite shifts during vertebrate development. In tuberculosis research, zebrafish models have helped identify metabolic biomarkers with potential translational relevance. Studies on Alzheimer's disease suggest that metabolomics can elucidate neuroprotective mechanisms, while investigations into obesity have provided insights into metabolic imbalances associated with kidney dysfunction. Furthermore, toxicometabolomic studies have demonstrated the utility of zebrafish in assessing drug-induced renal injury. Despite their advantages, zebrafish metabolomics faces challenges, including differences in metabolic rates compared to mammals, the need for standardized protocols, and limitations in metabolite database annotations. Nonetheless, integrating metabolomics with other omics approaches holds great promise for advancing disease research and paving the way for personalized medicine.
由于斑马鱼(Danio rerio)与人类具有遗传相似性、发育迅速且适用于高通量研究,它们已成为生物医学研究中的一种重要模式生物。斑马鱼的代谢组学分析为健康和疾病背后的生化途径提供了关键见解。本综述通过全面的文献回顾,探讨了代谢组学在斑马鱼研究中的应用,突出了其在理解胚胎发育、结核病、阿尔茨海默病等神经退行性疾病、肥胖相关代谢功能障碍以及药物诱导毒性方面的贡献。斑马鱼代谢组学揭示了脊椎动物发育过程中动态的代谢物变化。在结核病研究中,斑马鱼模型有助于识别具有潜在转化相关性的代谢生物标志物。对阿尔茨海默病的研究表明,代谢组学可以阐明神经保护机制,而对肥胖的研究则深入了解了与肾功能障碍相关的代谢失衡。此外,毒理代谢组学研究证明了斑马鱼在评估药物诱导的肾损伤方面的实用性。尽管斑马鱼代谢组学具有优势,但也面临挑战,包括与哺乳动物相比代谢率的差异、对标准化方案的需求以及代谢物数据库注释的局限性。尽管如此,将代谢组学与其他组学方法相结合,对于推进疾病研究和为个性化医疗铺平道路具有巨大潜力。