• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

诺如病毒多表位疫苗的计算机辅助设计与体内验证一体化研究

Integrated in-silico design and in vivo validation of multi-epitope vaccines for norovirus.

作者信息

Qiu Jingxuan, Wei Yiwen, Shu Jiayi, Zheng Wenjing, Zhang Yuxi, Xie Junting, Zhang Dong, Luo Xiaochuan, Sun Xiulan, Wang Xin, Wang Sijie, Wang Xuanyi, Qiu Tianyi

机构信息

School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai, 200093, China.

Institute of Clinical Science, Clinical Center of Biotherapy, Zhongshan Hospital, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, Shanghai Medical College, Fudan University, 200032, Shanghai, China.

出版信息

Virol J. 2025 May 27;22(1):166. doi: 10.1186/s12985-025-02796-6.

DOI:10.1186/s12985-025-02796-6
PMID:40426240
Abstract

BACKGROUND

Norovirus (NoVs) is a foodborne pathogen that causes acute gastroenteritis. The diversity of its principal antigenic protein poses a significant challenge to vaccine development and the prevention of large-scale outbreaks globally. Currently, no licensed vaccines against norovirus have been approved.

METHODS

We developed a novel pipeline that integrates multiple bioinformatics tools to design broad-spectrum vaccines against NoVs. Specifically, broad-spectrum T-cell epitope vaccines were designed based on consensus sequences and optimized epitope screening, while broad-spectrum B-cell spatial epitope vaccines were constructed using high-throughput antigenicity calculations and epitope mapping.

RESULTS

This pipeline underwent rigorous validation at three levels: firstly, In silico validation: Analysis of properties and structures demonstrated the appropriateness of amino acid composition and the structural integrity of the vaccine sequences. Secondly, theoretical assessment: Evaluation of human leukocyte antigen (HLA) subtype and antigenicity coverage indicated a broad theoretical protective spectrum for the designed vaccine immunogens. Furthermore, in silico simulation confirmed their ability to elicit an immune response. Finally, animal-level validation: Experiments in mice showed that both vaccine immunogens stimulated high levels of IgG and IgA. Notably, Vac-B induced a strong IgG response against GII.2 and a robust IgA response against GII.17, comparable to the immune response elicited by the wild-type NoV non-replicating virus-like particle (VLP) protein group.

CONCLUSIONS

Both in silico and in vivo experimental findings suggest that the proposed pipeline and vaccine immunogens could serve as valuable theoretical guidance for the development of multi-epitope vaccines against NoVs.

摘要

背景

诺如病毒(NoVs)是一种食源性病原体,可引起急性肠胃炎。其主要抗原蛋白的多样性对疫苗研发及全球大规模疫情的防控构成了重大挑战。目前,尚无针对诺如病毒的获批许可疫苗。

方法

我们开发了一种整合多种生物信息学工具的新型流程,用于设计针对诺如病毒的广谱疫苗。具体而言,基于共有序列和优化的表位筛选设计了广谱T细胞表位疫苗,同时利用高通量抗原性计算和表位图谱构建了广谱B细胞空间表位疫苗。

结果

该流程在三个层面进行了严格验证:其一,计算机模拟验证:对特性和结构的分析表明疫苗序列的氨基酸组成合适且结构完整。其二,理论评估:对人类白细胞抗原(HLA)亚型和抗原性覆盖范围的评估表明,所设计的疫苗免疫原具有广泛的理论保护谱。此外,计算机模拟证实了它们引发免疫反应的能力。最后,动物水平验证:在小鼠身上进行的实验表明,两种疫苗免疫原均刺激产生了高水平的IgG和IgA。值得注意的是,Vac-B诱导了针对GII.2的强烈IgG反应以及针对GII.17的强劲IgA反应,与野生型诺如病毒非复制性病毒样颗粒(VLP)蛋白组引发的免疫反应相当。

结论

计算机模拟和体内实验结果均表明,所提出的流程和疫苗免疫原可为开发针对诺如病毒的多表位疫苗提供有价值的理论指导。

相似文献

1
Integrated in-silico design and in vivo validation of multi-epitope vaccines for norovirus.诺如病毒多表位疫苗的计算机辅助设计与体内验证一体化研究
Virol J. 2025 May 27;22(1):166. doi: 10.1186/s12985-025-02796-6.
2
Manipulation of immunodominant variable epitopes of norovirus capsid protein elicited cross-blocking antibodies to different GII.4 variants despite the low potency of the polyclonal sera.尽管多克隆血清效力较低,但对诺如病毒衣壳蛋白免疫显性可变表位的操作仍引发了针对不同GII.4变体的交叉阻断抗体。
J Virol. 2025 Jul 22;99(7):e0061125. doi: 10.1128/jvi.00611-25. Epub 2025 May 30.
3
Vaccinia Virus Vector Bivalent Norovirus Vaccine.痘苗病毒载体二价诺如病毒疫苗
Viruses. 2025 Feb 9;17(2):237. doi: 10.3390/v17020237.
4
Highly variable antigenic site located at the apex of GII.4 norovirus capsid protein induces cross-reactive blocking antibodies in a variant-specific manner.位于GII.4诺如病毒衣壳蛋白顶端的高度可变抗原位点以变体特异性方式诱导交叉反应性阻断抗体。
J Virol. 2025 Jul 22;99(7):e0065225. doi: 10.1128/jvi.00652-25. Epub 2025 May 30.
5
In silico designing of multi-epitope vaccine against canine parvovirus using reverse vaccinology.利用反向疫苗学技术设计犬细小病毒多表位疫苗
Braz J Microbiol. 2024 Sep;55(3):2953-2968. doi: 10.1007/s42770-024-01442-7. Epub 2024 Jul 26.
6
Immuno-informatics analyses of important esophageal cancer associated viruses for multi-epitope vaccine design.用于多表位疫苗设计的重要食管癌相关病毒的免疫信息学分析
Front Immunol. 2025 Jul 8;16:1587224. doi: 10.3389/fimmu.2025.1587224. eCollection 2025.
7
Immunoinformatics-Driven Design of a Multi-Epitope Vaccine Targeting Simian Virus VP1 Major Capsid Protein for Oncogenic Viral Infection Prevention.免疫信息学驱动设计靶向猿猴病毒VP1主要衣壳蛋白的多表位疫苗以预防致癌病毒感染
Rev Med Virol. 2025 Sep;35(5):e70065. doi: 10.1002/rmv.70065.
8
A novel mRNA-based multi-epitope vaccine for rabies virus computationally designed via reverse vaccinology and immunoinformatics.一种通过反向疫苗学和免疫信息学进行计算机设计的新型基于mRNA的狂犬病病毒多表位疫苗。
Sci Rep. 2025 Aug 19;15(1):30355. doi: 10.1038/s41598-025-16143-w.
9
Immunoinformatic design of chimeric multiepitope vaccine for the prevention of human metapneumovirus (hMPV).用于预防人偏肺病毒(hMPV)的嵌合多表位疫苗的免疫信息学设计
BMC Infect Dis. 2025 Jul 30;25(1):964. doi: 10.1186/s12879-025-11339-x.
10
Computational design of a multi-epitope mRNA vaccine against orthopoxviruses: A path toward comprehensive poxvirus protection.针对正痘病毒的多表位mRNA疫苗的计算设计:实现全面痘病毒防护的途径。
Comput Biol Med. 2025 Sep;196(Pt A):110764. doi: 10.1016/j.compbiomed.2025.110764. Epub 2025 Jul 14.

引用本文的文献

1
Rational design of an epitope-centric vaccine against using pangenomic insights and immunoinformatics approach.利用泛基因组见解和免疫信息学方法针对[具体疾病或病原体]进行以表位为中心的疫苗合理设计。 (注:原文中against后缺少具体对象)
Front Immunol. 2025 Sep 1;16:1617251. doi: 10.3389/fimmu.2025.1617251. eCollection 2025.
2
A novel mRNA-based multi-epitope vaccine for rabies virus computationally designed via reverse vaccinology and immunoinformatics.一种通过反向疫苗学和免疫信息学进行计算机设计的新型基于mRNA的狂犬病病毒多表位疫苗。
Sci Rep. 2025 Aug 19;15(1):30355. doi: 10.1038/s41598-025-16143-w.

本文引用的文献

1
Achievement and Challenges in Orthohantavirus Vaccines.正汉坦病毒疫苗的成就与挑战
Vaccines (Basel). 2025 Feb 17;13(2):198. doi: 10.3390/vaccines13020198.
2
Advances of computational methods enhance the development of multi-epitope vaccines.计算方法的进步推动了多表位疫苗的发展。
Brief Bioinform. 2024 Nov 22;26(1). doi: 10.1093/bib/bbaf055.
3
Design of Novel Vaccines Based on Virus-Like Particles.基于病毒样颗粒的新型疫苗设计
Subcell Biochem. 2024;105:785-821. doi: 10.1007/978-3-031-65187-8_21.
4
The Immune Epitope Database (IEDB): 2024 update.免疫表位数据库(IEDB):2024年更新
Nucleic Acids Res. 2025 Jan 6;53(D1):D436-D443. doi: 10.1093/nar/gkae1092.
5
TgVax452, an epitope-based candidate vaccine targeting Toxoplasma gondii tachyzoite-specific SAG1-related sequence (SRS) proteins: immunoinformatics, structural simulations and experimental evidence-based approaches.TgVax452,一种基于表位的候选疫苗,针对刚地弓形虫速殖子特异性 SAG1 相关序列(SRS)蛋白:免疫信息学、结构模拟和基于实验证据的方法。
BMC Infect Dis. 2024 Aug 29;24(1):886. doi: 10.1186/s12879-024-09807-x.
6
A narrative review of norovirus epidemiology, biology, and challenges to vaccine development.一篇关于诺如病毒流行病学、生物学及疫苗研发挑战的叙述性综述。
NPJ Vaccines. 2024 May 29;9(1):94. doi: 10.1038/s41541-024-00884-2.
7
Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
8
The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024.2024 年 EMBL-EBI 作业调度程序序列分析工具框架
Nucleic Acids Res. 2024 Jul 5;52(W1):W521-W525. doi: 10.1093/nar/gkae241.
9
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations.DiscoTope-3.0:利用反向折叠潜在表示改进 B 细胞表位预测。
Front Immunol. 2024 Feb 8;15:1322712. doi: 10.3389/fimmu.2024.1322712. eCollection 2024.
10
Exploring the hub genes and potential drugs involved in Fanconi anemia using microarray datasets and bioinformatics analysis.利用微阵列数据集和生物信息学分析探索范科尼贫血相关的枢纽基因和潜在药物。
J Biomol Struct Dyn. 2025 Apr;43(7):3297-3310. doi: 10.1080/07391102.2023.2297008. Epub 2023 Dec 27.