Volkova Natalia A, Romanov Michael N, Dzhagaev Alan Yu, Larionova Polina V, Volkova Ludmila A, Abdelmanova Alexandra S, Vetokh Anastasia N, Griffin Darren K, Zinovieva Natalia A
L. K. Ernst Federal Research Center for Animal Husbandry, Dubrovitsy, Podolsk 142132, Moscow Oblast, Russia.
School of Natural Sciences, University of Kent, Canterbury CT2 7NJ, Kent, UK.
Genes (Basel). 2025 May 15;16(5):583. doi: 10.3390/genes16050583.
: Finding single nucleotide polymorphisms (SNPs) and candidate genes that influence the expression of key traits is essential for genomic selection and helps improve the efficiency of poultry production. Here, we aimed to conduct a genome-wide association study (GWAS) for egg production traits in an F resource population of chickens (). : The examined F population was produced by crossing two divergently selected breeds with contrasting phenotypes for egg performance traits, namely Russian White (of higher egg production) and Cornish White (of lower egg production). Sampled birds ( = 142) were genotyped using the Illumina Chicken 60K SNP iSelect BeadChip. : In the course of the GWAS analysis, we were able to clarify significant associations with phenotypic traits of interest and economic value by using 47,432 SNPs after the genotype dataset was filtered. At the threshold < 1.06 × 10, we found 23 prioritized candidate genes (PCGs) associated with egg weight at the age of 42-52 weeks (, ), duration of egg laying (), egg laying cycle () and egg laying interval (, , , , , , , , , , , , , , , , , , ). Moreover, two SNPs were co-localized within the gene. : Based on our GWAS findings, the revealed SNPs and candidate genes can be used as genetic markers for egg weight and other performance characteristics in chickens to attain genetic enhancement in production and for further genomic selection.
寻找影响关键性状表达的单核苷酸多态性(SNP)和候选基因对于基因组选择至关重要,有助于提高家禽生产效率。在此,我们旨在对鸡的一个F资源群体的产蛋性状进行全基因组关联研究(GWAS)。:所检测的F群体是通过将两个在产蛋性能性状上具有相反表型的差异选择品种杂交产生的,即产蛋量较高的俄罗斯白鸡和产蛋量较低的康沃尔白鸡。对采样的鸡(n = 142)使用Illumina Chicken 60K SNP iSelect BeadChip进行基因分型。:在GWAS分析过程中,在对基因型数据集进行过滤后,我们使用47,432个SNP能够明确与感兴趣的表型性状和经济价值的显著关联。在阈值P < 1.06 × 10时,我们发现了23个优先候选基因(PCG),它们与42 - 52周龄时的蛋重(,)、产蛋持续时间()、产蛋周期()和产蛋间隔(,,,,,,,,,,,,,,,,,,)相关。此外,两个SNP共定位于基因内。:基于我们的GWAS研究结果,所揭示的SNP和候选基因可作为鸡的蛋重和其他生产性能特征的遗传标记,以实现生产中的遗传改良并用于进一步的基因组选择。