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无刺蜂(蜜蜂科:蜜蜂亚科)线粒体基因组的完整特征及系统发育基因组学研究

Complete Mitochondrial Genome Characterization and Phylogenomics of the Stingless Bee, (Apidae: Meliponini).

作者信息

Duangphakdee Orawan, Poolprasert Pisit, Rattanawannee Atsalek

机构信息

Native Honeybee and Pollinator Research Center, Ratchaburi Campus, King Mongkut's University of Technology Thonburi, Thung Khru, Bangkok 10140, Thailand.

Department of Entomology, Faculty of Agriculture, Kasetsart University, 50 Ngam Wong Wan Road, Lat Yao, Chatuchak, Bangkok 10900, Thailand.

出版信息

Insects. 2025 May 19;16(5):535. doi: 10.3390/insects16050535.

Abstract

With increasing demand for stingless bee honey, meliponiculture has gained widespread attention. is one of the most economically important species. However, excessive exploitation for commercial purposes has led to population declines, and the species is now considered vulnerable in Thailand. Despite its ecological and economic significance, genomic and taxonomic information on remains limited. In this study, we sequenced and characterized the complete mitochondrial genome (mitogenome) of to explore its genome structure and phylogenetic position. The circular mitogenome is 15,318 bp in length and consists of 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and 2 ribosomal RNA (rRNA) genes. The genome exhibits a strong A+T bias (75.41%), which affects codon usage and amino acid composition. Isoleucine, methionine, and phenylalanine were the most commonly encoded amino acids. Gene arrangement was highly conserved and closely resembled that of species. Phylogenetic analyses confirmed that clusters with other stingless bees and is more closely related to bumblebees than to honeybees. Several gene rearrangements suggest a high degree of mitogenomic plasticity. This study provides essential genomic resources for future studies in systematics, phylogenetics, population genetics, and conservation of stingless bees in the Meliponini tribe.

摘要

随着对无刺蜂蜂蜜需求的增加,无刺蜂养殖已受到广泛关注。[物种名称]是经济上最重要的物种之一。然而,出于商业目的的过度开发导致其种群数量下降,该物种目前在泰国被视为易危物种。尽管其具有生态和经济意义,但关于[物种名称]的基因组和分类学信息仍然有限。在本研究中,我们对[物种名称]的完整线粒体基因组(mitogenome)进行了测序和特征分析,以探索其基因组结构和系统发育位置。环状线粒体基因组长度为15,318 bp,由13个蛋白质编码基因(PCGs)、22个转移RNA(tRNA)基因和2个核糖体RNA(rRNA)基因组成。该基因组表现出强烈的A+T偏向性(75.41%),这影响了密码子使用和氨基酸组成。异亮氨酸、甲硫氨酸和苯丙氨酸是最常见编码的氨基酸。基因排列高度保守,与[相关物种名称]的排列非常相似。系统发育分析证实,[物种名称]与其他无刺蜂聚集在一起,与熊蜂的关系比与蜜蜂的关系更密切。一些基因重排表明线粒体基因组具有高度可塑性。本研究为未来关于Meliponini部落无刺蜂的系统学、系统发育学、种群遗传学和保护研究提供了重要的基因组资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/744c/12111875/b0fe0adf1982/insects-16-00535-g001.jpg

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