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在[具体物种名]中全基因组鉴定109个NAC基因及其在冷胁迫下的动态表达谱

Genome-Wide Identification of 109 NAC Genes and Dynamic Expression Profiles Under Cold Stress in .

作者信息

Chen Yule, Qin Jiayu, Wang Ziyao, Lin Haoyou, Ye Shuiyun, Wei Jichen, Wang Shuyu, Zhang Lu

机构信息

College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China.

出版信息

Int J Mol Sci. 2025 May 14;26(10):4713. doi: 10.3390/ijms26104713.

Abstract

(), a tropical tree valued for its medicinal, nutritional, and industrial applications, exhibits severe sensitivity to low-temperature stress in subtropical regions, particularly during seedling establishment. To address this challenge, this study systematically identified 109 NAC genes in and characterized their functional roles in cold adaptation via multi-omics analyses. All NAC proteins were hydrophilic. Key members (e.g., , , ) were localized in the nucleus. Phylogenetic analysis grouped them with (RD26), a homolog involved in leaf senescence and ABA-regulated cold stress responses. The NAC family expanded primarily through segmental duplication. And low Ka/Ks ratios (<1) indicated purifying selection. Promoter analysis highlighted the prevalence of dehydration-responsive DRE and LTR cis-acting elements. Transcriptomic profiling under cold stress identified five continuous differentially expressed genes (, , , , and ) linked to regulatory functions. Homology modeling predicted 3D structures of cold-responsive NAC proteins, and STRING network analysis indicated independent regulatory mechanisms due to the absence of prominent interaction nodes. These findings advance our understanding of NAC-mediated cold tolerance and offer genetic targets to enhance resilience in subtropical climates.

摘要

()是一种因其药用、营养和工业用途而备受重视的热带树木,在亚热带地区对低温胁迫表现出严重的敏感性,尤其是在幼苗期。为应对这一挑战,本研究通过多组学分析系统地鉴定了()中的109个NAC基因,并表征了它们在冷适应中的功能作用。所有NAC蛋白均具有亲水性。关键成员(如,,)定位于细胞核。系统发育分析将它们与(RD26)归为一类,(RD26)是一个参与叶片衰老和ABA调节的冷应激反应的同源物。NAC家族主要通过片段重复进行扩展。低Ka/Ks比值(<1)表明存在纯化选择。启动子分析突出了脱水响应DRE和LTR顺式作用元件的普遍性。冷胁迫下的转录组分析确定了五个与调节功能相关的连续差异表达基因(,,,,和)。同源建模预测了冷响应NAC蛋白的三维结构,STRING网络分析表明由于缺乏突出的相互作用节点,存在独立的调节机制。这些发现增进了我们对NAC介导的耐寒性的理解,并为提高()在亚热带气候中的恢复力提供了遗传靶点。

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