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牡丹(安德鲁斯)NAC 基因家族成员的全基因组鉴定及其在热和淹水胁迫下的表达。

Genome-Wide Identification of NAC Gene Family Members of Tree Peony ( Andrews) and Their Expression under Heat and Waterlogging Stress.

机构信息

Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China.

College of Jiyang, Zhejiang A&F University, Zhuji 311800, China.

出版信息

Int J Mol Sci. 2024 Aug 28;25(17):9312. doi: 10.3390/ijms25179312.

Abstract

An important family of transcription factors (TFs) in plants known as NAC (NAM, ATAF1/2, and CUC2) is crucial for the responses of plants to environmental stressors. In this study, we mined the NAC TF family members of tree peony ( Andrews) from genome-wide data and analyzed their response to heat and waterlogging stresses in conjunction with transcriptome data. Based on tree peony's genomic information, a total of 48 genes were discovered. Based on how similar their protein sequences were, these genes were divided into 14 branches. While the gene structures and conserved protein motifs of the genes within each branch were largely the same, the cis-acting elements in the promoter region varied significantly. Transcriptome data revealed the presence of five genes (, , , , ) and one gene () in response to heat and waterlogging stresses, respectively. qRT-PCR analysis reconfirmed the response of these five genes to heat stress and one gene to waterlogging stress. This study lays a foundation for the study of the functions and regulatory mechanisms of NAC TFs in tree peony. Meanwhile, the NAC TFs of tree peony in response to heat and waterlogging stress were excavated, which is of great significance for the selection and breeding of new tree peony varieties with strong heat and waterlogging tolerance.

摘要

植物中一类重要的转录因子(TFs)家族,即 NAC(NAM、ATAF1/2 和 CUC2),对于植物对环境胁迫的响应至关重要。本研究从基因组范围内的数据中挖掘牡丹(Anderss.)的 NAC TF 家族成员,并结合转录组数据分析它们对热和水淹胁迫的响应。基于牡丹的基因组信息,共发现了 48 个基因。根据其蛋白质序列的相似性,这些基因被分为 14 个分支。尽管每个分支内的基因结构和保守蛋白基序基本相同,但启动子区域的顺式作用元件差异显著。转录组数据显示,有五个基因(、、、、)和一个基因()分别对热和水淹胁迫有响应。qRT-PCR 分析进一步证实了这五个基因对热胁迫和一个基因对水淹胁迫的响应。本研究为牡丹 NAC TF 功能和调控机制的研究奠定了基础。同时,挖掘了牡丹对热和水淹胁迫响应的 NAC TF,这对于选育具有较强耐热和耐水淹能力的牡丹新品种具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a6ed/11395581/d7e919c71075/ijms-25-09312-g001.jpg

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