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本文引用的文献

1
Whole Genome Analysis and Assessment of the Metabolic Potential of Strain 112, a Degrader of Aromatic and Aliphatic Compounds.全基因组分析及对菌株112代谢潜力的评估，菌株112为芳香族和脂肪族化合物降解菌
Biology (Basel). 2023 May 15;12(5):721. doi: 10.3390/biology12050721.
2
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
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NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
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A large-scale evaluation of algorithms to calculate average nucleotide identity.计算平均核苷酸一致性的算法的大规模评估。
Antonie Van Leeuwenhoek. 2017 Oct;110(10):1281-1286. doi: 10.1007/s10482-017-0844-4. Epub 2017 Feb 15.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
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Genome sequence-based species delimitation with confidence intervals and improved distance functions.基于基因组序列的具有置信区间和改进距离函数的物种界定。
BMC Bioinformatics. 2013 Feb 21;14:60. doi: 10.1186/1471-2105-14-60.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
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Using Tablet for visual exploration of second-generation sequencing data.使用平板电脑探索第二代测序数据。
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112的全基因组序列，112是一种有潜力的芳香族和脂肪族化合物降解菌。

Complete genome sequence of 112, a promising degrader of aromatic and aliphatic compounds.

作者信息

Frantsuzova Ekaterina, Kocharovskaya Yulia, Vetrova Anna, Delegan Yanina, Bogun Alexander

机构信息

Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center "Pushchino Scientific Center for Biological Research of Russian Academy of Sciences" (FRC PSCBR RAS), Pushchino, Moscow Oblast, Russia.

出版信息

Microbiol Resour Announc. 2025 Jul 10;14(7):e0011425. doi: 10.1128/mra.00114-25. Epub 2025 May 28.

DOI:10.1128/mra.00114-25
PMID:40434087
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12243503/
Abstract

The strain 112 is a promising degrader of aromatic and aliphatic compounds. The genome of the strain was sequenced and completely assembled. It consists of a 5,108,631 bp circular chromosome (guanine-cytosine [GC] 67.34%) and two circular plasmids: pCP998 (99,888 bp, GC 64.81%) and pCP905 (90,599 bp, GC 65.89%).

摘要

菌株112是一种很有前景的芳香族和脂肪族化合物降解菌。对该菌株的基因组进行了测序并完全组装。它由一条5,108,631 bp的环状染色体（鸟嘌呤-胞嘧啶[GC]含量为67.34%）和两个环状质粒组成：pCP998（99,888 bp，GC含量为64.81%）和pCP905（90,599 bp，GC含量为65.89%）。