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基于磷核磁共振的组织提取物代谢组学增强标准操作规程。

Enhanced Standard Operating Procedures for P NMR-Based Metabolomics in Tissue Extracts.

作者信息

Martin-Ramos Sara, Bilbao Jon, Diercks Tammo, Mato José M, Bernardo-Seisdedos Ganeko, Millet Oscar

机构信息

Precision Medicine and Metabolism Laboratory, CIC bioGUNE, Basque Research and Technology Alliance, Parque Tecnológico de Bizkaia, Ed. 800, 48160 Derio, Spain.

NMR Platform, CIC bioGUNE, Basque Research and Technology Alliance, Parque Tecnológico de Bizkaia, Ed. 800, 48160 Derio, Spain.

出版信息

JACS Au. 2025 Apr 13;5(5):2285-2293. doi: 10.1021/jacsau.5c00234. eCollection 2025 May 26.

Abstract

Phosphorylated metabolites, here referred to as phosphometabolites, are sufficiently abundant and widely distributed to provide a condensed representation of metabolism that can be readily accessed through NMR spectroscopy. This study addresses the challenge of precisely quantifying phosphometabolites via quantitative P NMR from tissue extracts. We optimized standard operating procedures for enhanced spectral resolution, signal intensity, and accuracy. By amply evaluating solvent and buffer conditions, reference compounds, and paramagnetic relaxation enhancers, we identified optimal conditions for metabolite analysis, including the use of trimethylphosphine oxide for accurate signal referencing due to its short T1 relaxation time and minimal offset and glycine buffer (in DO) at pD 9.5, where virtually invariant P signal frequencies and sample osmolarities are observed, along with maximal NMR detection sensitivity and temperature stability of the pH. These methodological advancements significantly improve the reliability and reproducibility of phosphometabolite characterization, allowing the assignment of up to 60 independent signals in the one-dimensional (1D) P spectrum (of a total of 94 peaks), that resulted in the proper quantification of 44 phosphometabolites from different tissular samples.

摘要

磷酸化代谢物,在此称为磷代谢物,其含量足够丰富且分布广泛,能够提供代谢的浓缩表征,可通过核磁共振波谱轻松获取。本研究解决了通过对组织提取物进行定量磷核磁共振精确量化磷代谢物的挑战。我们优化了标准操作程序,以提高光谱分辨率、信号强度和准确性。通过充分评估溶剂和缓冲条件、参考化合物和顺磁弛豫增强剂,我们确定了代谢物分析的最佳条件,包括使用三甲基氧化膦进行精确的信号参考,因为其T1弛豫时间短且偏移最小,以及在pD 9.5的甘氨酸缓冲液(溶于重水),在此观察到磷信号频率和样品渗透压几乎不变,同时具有最大的核磁共振检测灵敏度和pH的温度稳定性。这些方法学进展显著提高了磷代谢物表征的可靠性和可重复性,使得在一维(1D)磷谱(总共94个峰)中能够识别多达60个独立信号,从而对来自不同组织样品的44种磷代谢物进行了准确量化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c79/12117410/3f986c603b12/au5c00234_0001.jpg

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