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秀丽隐杆线虫早期胚胎中mRNA翻译的格局与调控

Landscape and regulation of mRNA translation in the early C. elegans embryo.

作者信息

Shukla Yash, Ghatpande Vighnesh, Hu Cindy F, Dickinson Daniel J, Cenik Can

机构信息

Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.

Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX 78712, USA.

出版信息

Cell Rep. 2025 May 30;44(6):115778. doi: 10.1016/j.celrep.2025.115778.

DOI:10.1016/j.celrep.2025.115778
PMID:40450690
Abstract

Animal embryos rely on regulated translation of maternally deposited mRNAs to drive early development. Using low-input ribosome profiling combined with RNA sequencing on precisely staged embryos, we measure mRNA translation during the first four cell cycles of C. elegans development. We uncover stage-specific patterns of developmentally coordinated translational regulation. Our results confirm that mRNA localization correlates with translational efficiency, though initial translational repression in germline precursors occurs before P-granule association. Our analysis suggests that the RNA-binding protein OMA-1 represses the translation of its target mRNAs in a stage-specific manner while indirectly promoting the translational efficiency of other transcripts. These findings illuminate how post-transcriptional mechanisms shape the embryonic proteome to direct cell differentiation, with implications for understanding similar regulation across species where maternal factors guide early development.

摘要

动物胚胎依靠母源沉积mRNA的翻译调控来驱动早期发育。我们在精确分期的胚胎上结合RNA测序使用低输入核糖体图谱分析,测量秀丽隐杆线虫发育前四个细胞周期中的mRNA翻译。我们发现了发育协调翻译调控的阶段特异性模式。我们的结果证实,mRNA定位与翻译效率相关,尽管种系前体中的初始翻译抑制发生在P颗粒结合之前。我们的分析表明,RNA结合蛋白OMA-1以阶段特异性方式抑制其靶mRNA的翻译,同时间接促进其他转录本的翻译效率。这些发现阐明了转录后机制如何塑造胚胎蛋白质组以指导细胞分化,对理解母体因素指导早期发育的跨物种类似调控具有启示意义。

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本文引用的文献

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Ribo-ITP: A Method for Ribosome Profiling in Single Cells and Low-Input Samples.核糖-ITP:一种用于单细胞和低输入量样本核糖体谱分析的方法。
Methods Mol Biol. 2025;2923:197-214. doi: 10.1007/978-1-0716-4522-2_12.
2
A spatiotemporally resolved atlas of mRNA decay in the embryo reveals differential regulation of mRNA stability across stages and cell types.胚胎中 mRNA 衰减的时空分辨图谱揭示了不同阶段和细胞类型中 mRNA 稳定性的差异调节。
Genome Res. 2024 Sep 20;34(8):1235-1252. doi: 10.1101/gr.278980.124.
3
Caenorhabditis elegans germ granules accumulate hundreds of low translation mRNAs with no systematic preference for germ cell fate regulators.
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Development. 2024 Jul 1;151(13). doi: 10.1242/dev.202575. Epub 2024 Jul 10.
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Single-cell quantification of ribosome occupancy in early mouse development.单细胞定量分析早期小鼠发育过程中的核糖体占据情况。
Nature. 2023 Jun;618(7967):1057-1064. doi: 10.1038/s41586-023-06228-9. Epub 2023 Jun 21.
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Apicobasal RNA asymmetries regulate cell fate in the early mouse embryo.顶端-基底 RNA 不对称性调节早期小鼠胚胎中的细胞命运。
Nat Commun. 2023 May 30;14(1):2909. doi: 10.1038/s41467-023-38436-2.
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Germ granules in development.发育中的生殖质。
Development. 2023 Jan 15;150(2). doi: 10.1242/dev.201037. Epub 2023 Jan 30.
7
The role of RNA-binding proteins in orchestrating germline development in .RNA结合蛋白在调控……种系发育中的作用
Front Cell Dev Biol. 2023 Jan 4;10:1094295. doi: 10.3389/fcell.2022.1094295. eCollection 2022.
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