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利用核磁共振光谱实时探测酶促乙酰化事件:深入了解依赖酰基辅因子的组蛋白H4的p300修饰

Probing Enzymatic Acetylation Events in Real Time With NMR Spectroscopy: Insights Into Acyl-Cofactor Dependent p300 Modification of Histone H4.

作者信息

Dewing Sophia M, Showalter Scott A

机构信息

Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania, USA.

Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania, USA.

出版信息

Proteins. 2025 Jun 1. doi: 10.1002/prot.26848.

Abstract

Lysine acylation is a rapidly expanding class of post-translational modifications with largely unexplored functional roles; the study of acylations beyond acetylation is especially impeded by limited methods for their preparation, detection, and characterization in vitro. We previously reported a nuclear magnetic resonance (NMR)-based approach to monitor Nε-lysine acetylation following Ada2/Gcn5-catalyzed installation of a C-acetyl probe on the histone H3 tail. Building on this foundation, here we expand those techniques by demonstrating the installation and H, C-HSQC based NMR detection of both C-acetyl and C-propionyl probes on the histone H4 tail using a mutant p300 lysine acetyltransferase (KAT) enzyme with enhanced activity. Additionally, we introduce a continuous evaluation method for acyltransferase reaction data, enabling the extraction of relative rate constants-a technique inspired by our laboratory's recent work on NMR methyltransferase kinetics. This study demonstrates that our NMR-based approach to assay enzymatic C-acylation is adaptable, providing a versatile platform for investigating a range of acylations, KAT enzymes, and protein substrates. Notably, in the process of developing these methods, we observed that p300 KAT may display distinct modification site preferences and regulatory mechanisms depending on the acyl cofactor utilized, underscoring the method's potential to advance the emerging field of lysine acylation biochemistry.

摘要

赖氨酸酰化是一类快速扩展的翻译后修饰,其功能作用在很大程度上尚未得到探索;除乙酰化之外的酰化研究尤其受到体外制备、检测和表征方法有限的阻碍。我们之前报道了一种基于核磁共振(NMR)的方法,用于监测在Ada2/Gcn5催化下将C-乙酰基探针安装到组蛋白H3尾部后Nε-赖氨酸的乙酰化。在此基础上,我们通过使用具有增强活性的突变型p300赖氨酸乙酰转移酶(KAT)在组蛋白H4尾部安装并基于H、C-HSQC进行NMR检测C-乙酰基和C-丙酰基探针来扩展这些技术。此外,我们引入了一种用于酰基转移酶反应数据的连续评估方法,能够提取相对速率常数——这是一种受我们实验室最近关于NMR甲基转移酶动力学研究启发的技术。这项研究表明,我们基于NMR的酶促C-酰化检测方法具有适应性,为研究一系列酰化、KAT酶和蛋白质底物提供了一个通用平台。值得注意的是,在开发这些方法的过程中,我们观察到p300 KAT可能根据所使用的酰基辅因子表现出不同的修饰位点偏好和调控机制,这突出了该方法在推进赖氨酸酰化生物化学新兴领域方面的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85d7/12433257/198e36f04ccd/PROT-93-1837-g005.jpg

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