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基于高效聚合酶链反应的方法,利用物种特异性引物快速鉴定地星蘑菇。

Efficient PCR - based Approach for Rapid Identification of Earth Star Mushrooms Employing Species-Specific Primers.

作者信息

Kaewgrajang Tharnrat, Nakpong Leela, Foongchomchoi Yatawee, Ngernsaengsaruay Chatchai, Khunkrai Runchida, Bunlerlerd Kantida, Hasin Sasitorn, Voraphab Itsarapong, Sakolrak Baramee, Choosa-Nga Penpitcha, Phosri Cherdchai, Suksavate Warong, Nipitwattanaphon Mingkwan

机构信息

a Department of Forest Biology, Faculty of Forestry, Kasetsart University.

b Department of Genetics, Faculty of Science, Kasetsart University.

出版信息

Mycoscience. 2024 Oct 11;65(6):288-297. doi: 10.47371/mycosci.2024.09.002. eCollection 2025.

Abstract

species are valuable edible ectomycorrhizal mushrooms, particularly in Asia. The partial hypogenous nature of fruit bodies in soil present challenges for sample collection and studying species distribution. In this study, we developed a PCR-based approach for identifying . Two universal primers (AUPF1/AUPR1 and AUPF3/AUPR3) and specific primers for . (AAF4/AAR4), . (AOF4/AOR4), and . (ASF2/ASR4) were designed based on the alignment of internal transcribed spacer sequences from various species. Primer verification was performed by generating amplicons from extracted DNA of fruit bodies and 130 soil samples collected from beneath various host plants of spp. These novel primers were efficient and precise in identifying species. Our results have implications for multi-sample assays for identification and investigations into species distribution through large-scale inventories.

摘要

该物种是有价值的可食用外生菌根蘑菇,在亚洲尤其如此。子实体部分生于土壤中的特性给样本采集和物种分布研究带来了挑战。在本研究中,我们开发了一种基于PCR的方法来鉴定……两种通用引物(AUPF1/AUPR1和AUPF3/AUPR3)以及针对……(AAF4/AAR4)、……(AOF4/AOR4)和……(ASF2/ASR4)的特异性引物是基于来自各种……物种的内转录间隔区序列比对设计的。通过从子实体提取的DNA以及从……属植物的各种寄主植物下收集的130份土壤样本中生成扩增子来进行引物验证。这些新型引物在鉴定……物种方面高效且精确。我们的结果对于通过大规模清查进行……鉴定的多样本检测以及物种分布调查具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ce7/12119242/a06e6c6d1cf5/MYC-65-288-g01.jpg

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