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解决命名法中的争议:“”究竟指的是什么?

Addressing controversy in nomenclature: what exactly does "" refer to?

作者信息

Zepeda-Rivera Martha A, Dewhirst Floyd E, Bullman Susan, Johnston Christopher D

机构信息

Genomic Medicine, MD Anderson Cancer Center, Houston, TX, USA.

Microbiology, ADA Forsyth Institute, Cambridge, MA, USA.

出版信息

Gut Microbes. 2025 Dec;17(1):2514797. doi: 10.1080/19490976.2025.2514797. Epub 2025 Jun 4.

Abstract

The group () is historically composed of four subspecies ( subsp. , subsp. , subsp. , subsp. ). Although members are typically associated with oral disease, they have recently been shown to disseminate to the gastrointestinal tract and are associated with adverse health conditions such as inflammatory bowel disease and colorectal cancer (CRC). A growing debate over the nomenclature applied to taxonomy has resulted in different names for these lineages, shifting them from their historic subspecies designations to distinct species names (, , , ). This shift in naming scheme can lead to potentially significant confusion as "" can now refer to both the group () and a distinct lineage (; historically subsp. ). For example, the substantial body of literature documenting the involvement of "" () in CRC is seemingly contradicted by recent analyses showing that "" () is not enriched in CRC. However, this apparent contradiction is due only to changes in the updated naming scheme. Furthermore, discrepancies arising from this nomenclature shift can obscure the crucial role of other lineages in tumor biology, particularly that of subsp. /. Thus, the adoption of this nomenclature reclassification without careful consideration risks misleading non-experts and sparking misinterpretation of scientific literature and discourse. Here we elaborate on the challenges of the updated nomenclature scheme, propose tentative suggestions to improve accuracy and clarity, and call for a broader research community effort to discuss and implement a unified approach moving forward.

摘要

该菌群在历史上由四个亚种(亚种 、亚种 、亚种 、亚种 )组成。尽管该菌群成员通常与口腔疾病相关,但最近的研究表明它们会扩散至胃肠道,并与诸如炎症性肠病和结直肠癌(CRC)等不良健康状况有关。关于该菌群分类法命名的争论日益激烈,导致这些谱系有了不同的名称,从其历史上的亚种名称转变为不同的物种名称(、 、 、 )。这种命名方案的转变可能会导致潜在的重大混淆,因为“”现在既可以指代该菌群(),也可以指代一个不同的谱系(;历史上为亚种 )。例如,大量记录“”()参与结直肠癌的文献似乎与最近的分析相矛盾,后者表明“”()在结直肠癌中并未富集。然而,这种明显的矛盾仅仅是由于更新后的命名方案变化所致。此外,这种命名转变产生的差异可能会掩盖其他谱系在肿瘤生物学中的关键作用,尤其是亚种 / 的作用。因此,在没有仔细考虑的情况下采用这种命名重新分类可能会误导非专家,并引发对科学文献和论述的误解。在此,我们详细阐述更新后的命名方案所带来的挑战,提出提高准确性和清晰度的初步建议,并呼吁更广泛的研究界共同努力,讨论并实施一种统一的方法以推动未来的研究。

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