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人类卵母细胞向胚胎转变过程中的RNA mA图谱。

The RNA mA landscape during human oocyte-to-embryo transition.

作者信息

Li Yanjiao, Wang Yunhao, Cengiz Aylin, Jin Kang-Xuan, Castroviejo Blanca Corral, Lin Xiaolin, Indahl Marie, Zuo Rujuan, Skuland Trine, Fosslie Madeleine, Biba Maria, Wu Xuechen, Fedorcsak Peter, Bjørås Magnar, Filipczyk Adam, Dahl John Arne, Greggains Gareth D, Au Kin Fai, Klungland Arne

机构信息

Department of Microbiology, Oslo University Hospital, Rikshospitalet, Oslo, Norway.

Centre for Embryology and Healthy Development, University of Oslo, Oslo, Norway.

出版信息

EMBO J. 2025 Jun 4. doi: 10.1038/s44318-025-00474-5.

DOI:10.1038/s44318-025-00474-5
PMID:40467862
Abstract

RNA N-methyladenosine (mA, m6A) modification is a critical regulator for a range of physiological processes. However, the dynamic mA profiles within human preimplantation embryos remain uncharacterized. Here, we present the first RNA mA landscape of single human oocytes and early embryos. Comparative analyses with mouse data reveal an intriguing divergence during the window of zygotic genome activation. mA-modified genes are involved in regulation of gene transcription, while unmodified genes are mainly associated with basic metabolic processes. Maternal decay mRNAs exhibit a propensity for mA modifications, and these genes are targeted by miRNAs. mA modified genes that are constantly expressed across all stages demonstrate higher translation efficiency. Moreover, we observe frequent mA enrichment on stage-specifically expressed retrotransposons, particularly within young subfamilies. mA inhibitor leads to mA erasure on massive retrotransposons. In summary, this study provides a resource to broaden our understanding about the regulatory roles of mA during early human embryo development.

摘要

RNA N-甲基腺苷(mA,m6A)修饰是一系列生理过程的关键调节因子。然而,人类植入前胚胎内的动态mA图谱仍未得到表征。在此,我们展示了首个单个人类卵母细胞和早期胚胎的RNA mA图谱。与小鼠数据的比较分析揭示了合子基因组激活窗口期间的一个有趣差异。mA修饰的基因参与基因转录调控,而未修饰的基因主要与基本代谢过程相关。母体降解mRNA表现出mA修饰的倾向,并且这些基因是miRNA的靶标。在所有阶段持续表达的mA修饰基因表现出更高的翻译效率。此外,我们观察到阶段特异性表达的逆转座子上频繁出现mA富集,特别是在年轻亚科内。mA抑制剂导致大量逆转座子上的mA消除。总之,本研究提供了一种资源,以拓宽我们对mA在人类早期胚胎发育过程中调节作用的理解。

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引用本文的文献

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本文引用的文献

1
Comparative proteomic landscapes elucidate human preimplantation development and failure.比较蛋白质组图谱阐明人类植入前发育及发育失败的情况。
Cell. 2025 Feb 6;188(3):814-831.e21. doi: 10.1016/j.cell.2024.12.028. Epub 2025 Jan 23.
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mA modification negatively regulates translation by switching mRNA from polysome to P-body via IGF2BP3.mA 修饰通过 IGF2BP3 将 mRNA 从多核糖体切换到 P 体,从而负调控翻译。
Mol Cell. 2023 Dec 21;83(24):4494-4508.e6. doi: 10.1016/j.molcel.2023.10.040. Epub 2023 Nov 27.
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Single-nucleus multiomic mapping of mA methylomes and transcriptomes in native populations of cells with sn-m6A-CT.
利用sn-m6A-CT对天然细胞群体中的mA甲基化组和转录组进行单核多组学图谱分析。
Mol Cell. 2023 Aug 25. doi: 10.1016/j.molcel.2023.08.010.
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Modulation of translational decoding by mA modification of mRNA.mRNA 的 mA 修饰对翻译解码的调控。
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Crosstalk between RNA mA and DNA methylation regulates transposable element chromatin activation and cell fate in human pluripotent stem cells.RNA mA 与 DNA 甲基化之间的串扰调节人类多能干细胞中转座元件染色质的激活和细胞命运。
Nat Genet. 2023 Aug;55(8):1324-1335. doi: 10.1038/s41588-023-01452-5. Epub 2023 Jul 20.
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Single-cell mA mapping in vivo using picoMeRIP-seq.使用 picoMeRIP-seq 在体进行单细胞 mA 图谱分析。
Nat Biotechnol. 2024 Apr;42(4):591-596. doi: 10.1038/s41587-023-01831-7. Epub 2023 Jun 22.
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Rapid Evolution of the Embryonically Expressed Homeobox Gene LEUTX within Primates.灵长类动物中胚胎表达的同源盒基因 LEUTX 的快速进化。
Genome Biol Evol. 2023 Jun 1;15(6). doi: 10.1093/gbe/evad097.
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The RNA mA landscape of mouse oocytes and preimplantation embryos.小鼠卵母细胞和着床前胚胎的 RNA mA 景观。
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Reading and writing of mRNA mA modification orchestrate maternal-to-zygotic transition in mice.mRNA mA 修饰的读写调控小鼠的母源到合子的转变。
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Exon architecture controls mRNA mA suppression and gene expression.外显子结构控制 mRNA 的 mA 抑制和基因表达。
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