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用于甘薯改良的遗传标记数据。

Genetic marker data for sweetpotato improvement.

作者信息

Power Imana L, Scheffler Brian E, Liu Xiaofen F, Simpson Sheron A, Ballard Linda L, Lamb Marshall C, Arias Renee S

机构信息

Louisiana State University, AgCenter, Baton Rouge, LA 70803, USA.

USDA-ARS Genomics and Bioinformatics Research Unit, 141 Experiment Station Rd., Stoneville, MS 38776, USA.

出版信息

Data Brief. 2025 May 7;60:111630. doi: 10.1016/j.dib.2025.111630. eCollection 2025 Jun.

DOI:10.1016/j.dib.2025.111630
PMID:40486221
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12145558/
Abstract

A total of 768 molecular markers were developed for (L.) Lam., consisting of 689 simple sequence repeats (SSRs) and 79 single nucleotide polymorphisms (SNPs). All the markers were distributed across the sweet potato genome, averaging 51 markers per chromosome. The markers were tested on DNA samples from five cultivars of , assessing their amplification efficiency and polymorphism. Here we provide the primer sequences tested, their chromosome locations, the analysis including amplicon sizes, and highlight 92 that showed polymorphism between Beauregard and Tanzania. This dataset offers valuable resources for constructing high-resolution linkage maps and facilitates advanced genetic studies and breeding programs in sweetpotato.

摘要

总共为甘薯(Ipomoea batatas (L.) Lam.)开发了768个分子标记,其中包括689个简单序列重复(SSR)和79个单核苷酸多态性(SNP)。所有标记均分布在甘薯基因组中,平均每条染色体有51个标记。这些标记在五个甘薯品种的DNA样本上进行了测试,评估了它们的扩增效率和多态性。在此,我们提供了测试的引物序列、它们在染色体上的位置、包括扩增子大小的分析,并突出显示了92个在波瑞加德(Beauregard)和坦桑尼亚(Tanzania)之间表现出多态性的标记。该数据集为构建高分辨率连锁图谱提供了宝贵资源,并促进了甘薯的高级遗传研究和育种计划。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61e8/12145558/fc112711cd24/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61e8/12145558/f768b50c7e32/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61e8/12145558/fc112711cd24/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61e8/12145558/f768b50c7e32/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61e8/12145558/fc112711cd24/gr2.jpg

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Genetic marker data for sweetpotato improvement.用于甘薯改良的遗传标记数据。
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本文引用的文献

1
A Public Mid-Density Genotyping Platform for Hexaploid Sweetpotato ( [L.] Lam).一个用于六倍体甘薯([L.] Lam)的公共中密度基因分型平台。
Genes (Basel). 2024 Aug 9;15(8):1047. doi: 10.3390/genes15081047.
2
Biology and biotechnological aspect of sweet potato (Ipomoea batatas L.): a commercially important tuber crop.甘薯(Ipomoea batatas L.)的生物学和生物技术方面:一种具有商业重要性的块茎作物。
Planta. 2022 Jul 14;256(2):40. doi: 10.1007/s00425-022-03938-8.
3
Construction of a genetic map using EST-SSR markers and QTL analysis of major agronomic characters in hexaploid sweet potato (Ipomoea batatas (L.) Lam).
利用EST-SSR标记构建六倍体甘薯(Ipomoea batatas (L.) Lam)遗传图谱及主要农艺性状的QTL分析
PLoS One. 2017 Oct 11;12(10):e0185073. doi: 10.1371/journal.pone.0185073. eCollection 2017.
4
Development and Identification of SSR Markers Associated with Starch Properties and β-Carotene Content in the Storage Root of Sweet Potato (Ipomoea batatas L.).甘薯(Ipomoea batatas L.)块根中与淀粉特性和β-胡萝卜素含量相关的SSR标记的开发与鉴定
Front Plant Sci. 2016 Mar 2;7:223. doi: 10.3389/fpls.2016.00223. eCollection 2016.
5
Optimized construction of microsatellite-enriched libraries.微卫星富集文库的优化构建。
Mol Ecol Resour. 2010 May;10(3):508-15. doi: 10.1111/j.1755-0998.2009.02802.x. Epub 2009 Dec 9.
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Genic microsatellite markers in plants: features and applications.植物中的基因微卫星标记:特征与应用
Trends Biotechnol. 2005 Jan;23(1):48-55. doi: 10.1016/j.tibtech.2004.11.005.