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新型长链非编码RNA调控乳腺癌细胞系中的表达。

Novel lncRNA Regulates Expression in Breast Cancer Cell Line.

作者信息

Samorowska Klaudia, Wanowska Elżbieta, Szcześniak Michał Wojciech

机构信息

Faculty of Biology, Institute of Human Biology and Evolution, Adam Mickiewicz University in Poznan, Uniwersytetu Poznańskiego 6, 61-614 Poznań, Poland.

出版信息

Int J Mol Sci. 2025 May 26;26(11):5108. doi: 10.3390/ijms26115108.


DOI:10.3390/ijms26115108
PMID:40507918
Abstract

Long non-coding RNAs (lncRNAs) are transcripts over 200 nucleotides long that do not encode proteins. Although many lncRNAs remain uncharacterized, they are known to play diverse regulatory roles in gene expression. A group of lncRNAs called natural antisense transcripts can form double-stranded structures with their sense partners due to sequence complementarity. These duplexes can become substrates for A-to-I RNA editing, an epitranscriptomic modification mediated by ADAR enzymes. RNA editing is known to influence transcript splicing, affect the resulting gene expression product or alter RNA stability, all of which can impact cancer cell biology. Here, we show a novel natural antisense transcript, , that we have identified and characterized in terms of its cellular localization and sense partner interactions. Furthermore, we demonstrate that affects cell proliferation and regulates the stability of the sense transcript. Finally, using publicly available RNA sequencing data, we identify A-to-I RNA editing events in the protein-coding gene and further confirm them by RT-PCR and Sanger sequencing in MCF7 cell lines. We hypothesize that may act as a triggering factor for the A-to-I RNA editing process in its sense partner. Our findings highlight the regulatory role of and suggest its involvement in RNA editing and cancer biology.

摘要

长链非编码RNA(lncRNAs)是长度超过200个核苷酸且不编码蛋白质的转录本。尽管许多lncRNAs的功能仍未明确,但已知它们在基因表达中发挥多种调节作用。一类被称为天然反义转录本的lncRNAs可因其序列互补性与其正义链伙伴形成双链结构。这些双链体可成为A-to-I RNA编辑的底物,A-to-I RNA编辑是一种由ADAR酶介导的表观转录组修饰。已知RNA编辑会影响转录本剪接、影响最终的基因表达产物或改变RNA稳定性,所有这些都会影响癌细胞生物学特性。在此,我们展示了一种新的天然反义转录本,我们已对其细胞定位和正义链伙伴相互作用进行了鉴定和表征。此外,我们证明该转录本会影响细胞增殖并调节其正义链转录本的稳定性。最后,利用公开的RNA测序数据,我们在蛋白质编码基因中鉴定出A-to-I RNA编辑事件,并通过RT-PCR和桑格测序在MCF7细胞系中进一步证实了这些事件。我们假设该转录本可能作为其正义链伙伴中A-to-I RNA编辑过程的触发因子。我们的研究结果突出了该转录本的调节作用,并表明其参与了RNA编辑和癌症生物学过程。

相似文献

[1]
Novel lncRNA Regulates Expression in Breast Cancer Cell Line.

Int J Mol Sci. 2025-5-26

[2]
A natural antisense lncRNA controls breast cancer progression by promoting tumor suppressor gene mRNA stability.

PLoS Genet. 2018-11-29

[3]
Long noncoding RNA ADPGK-AS1 promotes cell proliferation, migration, and EMT process through regulating miR-3196/OTX1 axis in breast cancer.

In Vitro Cell Dev Biol Anim. 2019-7-1

[4]
-Stabilizing Long Noncoding RNA Promotes Hormone-Refractory Breast Cancer Progression.

Mol Cell Biol. 2019-11-12

[5]
Long noncoding RNA FGFR3-AS1 promotes osteosarcoma growth through regulating its natural antisense transcript FGFR3.

Mol Biol Rep. 2016-5

[6]
Long noncoding antisense RNA FAM83A-AS1 promotes lung cancer cell progression by increasing FAM83A.

J Cell Biochem. 2019-6

[7]
Long noncoding RNA TMPO-AS1 promotes progression of non-small cell lung cancer through regulating its natural antisense transcript TMPO.

Biochem Biophys Res Commun. 2019-6-21

[8]
Long noncoding RNA TTN-AS1 facilitates tumorigenesis and metastasis by maintaining TTN expression in skin cutaneous melanoma.

Cell Death Dis. 2020-8-20

[9]
Long non-coding antisense RNA GAS6-AS1 supports gastric cancer progression via increasing GAS6 expression.

Gene. 2019-2-5

[10]
Long Noncoding RNAs Papillary Thyroid Carcinoma Susceptibility Candidate 3 Antisense 1 and Papillary Thyroid Carcinoma Susceptibility Candidate 3 Synergistically Regulate ZC3H12A mRNA Stability via Vimentin at 14q13.3 Thyroid Cancer Locus.

Thyroid. 2025-6

本文引用的文献

[1]
A novel, effective machine learning-based RNA editing profile for predicting the prognosis of lower-grade gliomas.

Heliyon. 2023-7-7

[2]
Non-coding antisense transcripts: fine regulation of gene expression in cancer.

Comput Struct Biotechnol J. 2022-10-10

[3]
Emerging Roles of Long Noncoding RNAs in Breast Cancer Epigenetics and Epitranscriptomics.

Front Cell Dev Biol. 2022-7-5

[4]
Long non-coding RNAs are involved in alternative splicing and promote cancer progression.

Br J Cancer. 2022-5

[5]
mRNA Stability Assay Using transcription inhibition by Actinomycin D in Mouse Pluripotent Stem Cells.

Bio Protoc. 2018-11-5

[6]
The function of LncRNAs and their role in the prediction, diagnosis, and prognosis of lung cancer.

Clin Transl Med. 2021-4

[7]
MicroRNAs and Long Noncoding RNAs as Novel Therapeutic Targets in Estrogen Receptor-Positive Breast and Ovarian Cancers.

Int J Mol Sci. 2021-4-15

[8]
New insights into long non-coding RNAs in breast cancer: Biological functions and therapeutic prospects.

Exp Mol Pathol. 2021-6

[9]
The effects of RNA editing in cancer tissue at different stages in carcinogenesis.

RNA Biol. 2021-11

[10]
A long noncoding RNA, , modulates chromatin accessibility to regulate muscle stem cell myogenic lineage progression.

Proc Natl Acad Sci U S A. 2020-12-22

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