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通过整合全基因组关联研究(GWAS)和表达定量性状位点(eQTL)研究的汇总数据来预测动脉粥样硬化中与铁死亡相关的基因靶点。

Predicting the ferroptosis-associated gene targets in atherosclerosis by integrating GWAS and eQTL studies summary data.

作者信息

Li Juan, Nong Jiao, Huang Xiao Yan, Liu Qian, Liu Yuan Yuan, Sun Ji Chao, Zhu Wan Qing, Xie Sheng

机构信息

Guangxi University of Chinese Medicine, Nanning, China.

First Affiliated Hospital of Guangxi University of Chinese Medicine, Nanning, China.

出版信息

Medicine (Baltimore). 2025 Jun 13;104(24):e42846. doi: 10.1097/MD.0000000000042846.

DOI:10.1097/MD.0000000000042846
PMID:40527779
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12173328/
Abstract

Atherosclerosis is a chronic, low-grade inflammatory disease affecting the arteries, which causes cardiovascular disease by narrowing the patient's arterial blood vessels, and is currently the number 1 disease killer in the United States. Nevertheless, developing new animal model approaches and novel therapeutic strategies requires time to treat affected individuals who do not benefit from statins. However, the exact mechanism behind AS pathology is still unknown. Mendelian Randomization based on summary data, Bayesian co-localization methods, and bioinformatics analyses were conducted for the integration of genome-wide association studies summary-level data on AS, expression quantitative trait locus (eQTL) study, and the FerrDb database related to the ferroptosis-associated genes in blood. The study exploited the eQTL data, which were obtained from 31,684 participants of mostly European ancestry from the eQTLGen consortium, the genome-wide association studies data from the FinnGen project (data freeze 10), included 51,589 AS cases and 343,079 controls. ATG7, SREBF1, GLRX5, and SRSF9 were found to be associated with ferroptosis-related gene targets in AS, as revealed by summary-data-based Mendelian randomization analysis. ATG7 and SREBF1 genes and the trait of atherosclerosis were influenced strongly by shared causal variation and co-localized as suggested by the co-localization analysis. Enrichment analysis was showed that these genes might be responsible to involved in the autophagy-related biological pathways and ferroptosis. Four key genes associated with ferroptosis in atherosclerosis were identified and can serve as the potential biomarkers for ferroptosis-associated pathways for the disease diagnostic and therapeutic purposes. There is a need to conduct further functional investigations in the future.

摘要

动脉粥样硬化是一种影响动脉的慢性、低度炎症性疾病,它通过使患者动脉血管变窄而导致心血管疾病,目前是美国头号疾病杀手。然而,开发新的动物模型方法和新颖的治疗策略需要时间来治疗那些无法从他汀类药物中获益的患者。然而,动脉粥样硬化病理背后的确切机制仍然未知。基于汇总数据的孟德尔随机化、贝叶斯共定位方法以及生物信息学分析被用于整合全基因组关联研究关于动脉粥样硬化的汇总水平数据、表达定量性状位点(eQTL)研究以及与血液中与铁死亡相关基因的FerrDb数据库。该研究利用了eQTL数据,这些数据来自eQTLGen联盟中主要为欧洲血统的31684名参与者,以及来自芬兰基因组计划(数据冻结版本10)的全基因组关联研究数据,其中包括51589例动脉粥样硬化病例和343079例对照。基于汇总数据的孟德尔随机化分析显示,ATG7、SREBF1、GLRX5和SRSF9与动脉粥样硬化中与铁死亡相关的基因靶点有关。共定位分析表明,ATG7和SREBF1基因与动脉粥样硬化性状受到共同因果变异的强烈影响且共定位。富集分析表明,这些基因可能参与自噬相关的生物学途径和铁死亡。确定了与动脉粥样硬化中铁死亡相关的四个关键基因,它们可作为该疾病诊断和治疗目的的铁死亡相关途径的潜在生物标志物。未来有必要进行进一步的功能研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b132/12173328/6fcfa675b7eb/medi-104-e42846-g005.jpg
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本文引用的文献

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RSAD2 is abundant in atherosclerotic plaques and promotes interferon-induced CXCR3-chemokines in human smooth muscle cells.RSAD2 在动脉粥样硬化斑块中含量丰富,并促进人平滑肌细胞中干扰素诱导的 CXCR3-趋化因子。
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Antiferroptosis therapy alleviated the development of atherosclerosis.抗铁死亡疗法减轻了动脉粥样硬化的发展。
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Exosomes from hypoxic pretreated ADSCs attenuate ultraviolet light-induced skin injury via GLRX5 delivery and ferroptosis inhibition.
缺氧预处理 ADSCs 来源的外泌体通过 GLRX5 传递和抑制铁死亡来减轻紫外线诱导的皮肤损伤。
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STAT3 signaling promotes cardiac injury by upregulating NCOA4-mediated ferritinophagy and ferroptosis in high-fat-diet fed mice.STAT3 信号通过上调高脂肪饮食喂养小鼠中 NCOA4 介导的铁蛋白自噬和铁死亡促进心脏损伤。
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