Guo Zhonghao, Zhang Xurui, Li Yachen, Chen Yule, Xu Yungang
Department of Urology, the First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China.
Department of Cell Biology and Genetics, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, Xi'an, China.
Clin Transl Med. 2025 Jun;15(6):e70369. doi: 10.1002/ctm2.70369.
BACKGROUND: Alternative splicing (AS) plays a crucial role in regulating gene expression and governing proteomic diversity by generating multiple protein isoforms from a single gene. Increasing evidence has highlighted the regulation for pre-mRNA splicing of the splicing factors (SFs). This review aims to examine featured mechanisms and examples of SF regulation by AS, focusing on paradigmatic feedback loops and their biological implications. MAIN BODY OF THE ABSTRACT: We specifically focus on the autoregulation and inter-regulation of SFs through AS machinery. These interactions give rise to a feedback system, where the negative feedback loops aid in maintaining cellular homeostasis, and the positive feedback loops play roles in triggering cellular state transitions. We examine the growing evidence highlighting the specific mechanisms employed by SFs to autoregulate their own splicing, including AS-coupled nonsense-mediated mRNA decay (AS-NMD), nuclear retention, and alternative 3'UTR regulation. We showcase the influence of AS feedback in amyotrophic lateral sclerosis (ALS), frontotemporal dementia (FTD), and cancer. Furthermore, we discuss how master splicing factors can dominantly orchestrate splicing cascades, leading to widespread impacts in cellular processes. We also discuss how non-coding RNAs, particularly circular RNAs and microRNAs, engage in the splicing regulatory networks. Lastly, we showcase how negative and positive feedback loops can collaboratively achieve remarkable biological functions during the cell fate decision. SHORT CONCLUSION: This review highlights the regulation of SFs by AS, providing enriched information for future investigations that aim at deciphering the intricate interplay within splicing regulatory networks. KEY POINTS: Negative feedback of alternative splicing maintains cellular homeostasis. Positive feedback of alternative splicing triggers cellular state transitions. Alternative splicing forms integrated feedback networks with circRNAs and microRNAs to reciprocally regulate their expression and function. The coordinated interplay of distinct splicing feedback mechanisms orchestrates precise cell fate transitions. Future directions and therapeutic possibilities that could transform alternative splicing research into treatments.
背景:可变剪接(AS)在调节基因表达以及通过从单个基因产生多种蛋白质异构体来控制蛋白质组多样性方面发挥着关键作用。越来越多的证据强调了剪接因子(SFs)对前体mRNA剪接的调控作用。本综述旨在研究AS对SFs调控的特定机制和实例,重点关注典型的反馈回路及其生物学意义。 摘要主体:我们特别关注通过AS机制对SFs的自我调控和相互调控。这些相互作用产生了一个反馈系统,其中负反馈回路有助于维持细胞内稳态,而正反馈回路在触发细胞状态转变中发挥作用。我们研究了越来越多的证据,这些证据突出了SFs用于自我调控其自身剪接的特定机制,包括与AS相关的无义介导的mRNA降解(AS-NMD)、核滞留和可变3'UTR调控。我们展示了AS反馈在肌萎缩侧索硬化症(ALS)、额颞叶痴呆(FTD)和癌症中的影响。此外,我们讨论了主剪接因子如何主导协调剪接级联反应,从而对细胞过程产生广泛影响。我们还讨论了非编码RNA,特别是环状RNA和微小RNA如何参与剪接调控网络。最后,我们展示了负反馈回路和正反馈回路如何在细胞命运决定过程中协同实现显著的生物学功能。 简短结论:本综述强调了AS对SFs的调控作用,为未来旨在破译剪接调控网络内复杂相互作用的研究提供了丰富信息。 关键点:可变剪接的负反馈维持细胞内稳态。可变剪接的正反馈触发细胞状态转变。可变剪接与环状RNA和微小RNA形成整合反馈网络,以相互调节它们的表达和功能。不同剪接反馈机制的协同相互作用协调精确的细胞命运转变。未来的方向和治疗可能性可能将可变剪接研究转化为治疗方法。
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