Stuyver Thijs, Protsenko Olena, Avagliano Davide, Ward Thomas
Ecole Nationale Supérieure de Chimie de ParisUniversité PSL, i-CLeHS, CNRS, Paris, 75 005, France.
Department of Chemistry, University of Basel, Mattenstrasse 22, Basel, 4002, Switzerland.
Chemistry. 2025 Jul 17;31(40):e202501616. doi: 10.1002/chem.202501616. Epub 2025 Jun 27.
Nitrogen fixation is a fundamental, and yet challenging, chemical transformation due to the intrinsic inertness of dinitrogen. Whereas industrial ammonia synthesis relies on the energy-intensive Haber-Bosch process, nitrogenase enzymes achieve this transformation under ambient conditions-yet at the expense of a remarkably high ATP demand. Understanding their mode of operation could inspire the development of more efficient synthetic catalysts. In this study, we scrutinize the electrostatic environment surrounding nitrogenase's active site, the so-called M-cluster. Strikingly, we observe that all types of M-clusters exhibit similar trends, with distinct patterns around the individual metal sites that have been proposed as potential N-coordination sites. Specifically, a strong local electric field pointing away from the Fe2 site is identified, as well as a minor field pointing toward the Fe6 sites. Furthermore, a significant oriented long-range field along the Fe2-Fe6 axis is computed across the entire family of nitrogenases. In the final part of the manuscript, we discuss how the observed electrostatic patterns may impact chemical reactivity, and how they can be connected to previously made mechanistic hypotheses. Overall, this study provides further evidence for the ubiquitousness of local electric fields in enzyme catalysis, even when substrates that seemingly have only limited electrostatic susceptibility are involved.
由于氮气固有的惰性,氮固定是一种基本但具有挑战性的化学转化过程。工业合成氨依赖于能源密集型的哈伯-博施工艺,而固氮酶能够在环境条件下实现这种转化——然而代价是对ATP有极高的需求。了解它们的运作模式可能会激发更高效合成催化剂的开发。在本研究中,我们仔细研究了固氮酶活性位点(即所谓的M簇)周围的静电环境。引人注目的是,我们观察到所有类型的M簇都呈现出相似的趋势,在被提议作为潜在氮配位位点的各个金属位点周围有明显的模式。具体而言,确定了一个远离Fe2位点的强局部电场,以及一个指向Fe6位点的小电场。此外,在整个固氮酶家族中计算出了沿Fe2 - Fe6轴的显著定向长程电场。在论文的最后部分,我们讨论了观察到的静电模式可能如何影响化学反应性,以及它们如何与先前提出的机理假设相关联。总体而言,本研究进一步证明了局部电场在酶催化中普遍存在,即使涉及看似静电敏感性有限的底物。