Alariqi Muna, Ramadan Mohamed, Yu Lu, Hui Fengjiao, Hussain Amjad, Zhou Xiaofeng, Yu Yu, Zhang Xianlong, Jin Shuangxia
Hubei Hongshan Laboratory, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.
Department of Crops Science and Genetic Improvement, Faculty of Agriculture, Food and Environment, Sana'a University, Sana'a, 19065, Yemen.
Adv Sci (Weinh). 2025 Jul;12(28):e2416331. doi: 10.1002/advs.202416331. Epub 2025 Jun 23.
Derived from the bacterial immune system, CRISPR/Cas9 induces DSBs at specific DNA sequences, which are repaired by the cell's endogenous mechanisms, leading to gene insertions, deletions, or substitutions. Despite its transformative potential, several challenges remain in optimizing of CRISPR/Cas systems, including off-target effects, delivery methods, PAM restrictions, and the limitations of traditional editing approaches. This review focuses on the interplay between these challenges and their contributions to gene editing precision, specificity, accessibility, flexibility, and safety. How reducing off-target effects enhances specificity and safety is explored, while discussing the role of HDR-based editing in achieving precise gene modifications, alongside alternative methods such as base editing and prime editing. Improved delivery mechanisms are examined for their impact on accessibility and efficiency, while the reduction of PAM restrictions is highlighted for its contributions to flexibility. Lastly, emerging cleavage-free editing technologies are evaluated as they relate to safety and accessibility. This focused review aims to clarify the connections among these aspects and outline future research directions for advancing CRISPR-based applications.
CRISPR/Cas9源自细菌免疫系统,可在特定DNA序列上诱导双链断裂(DSB),细胞的内源性机制会对其进行修复,从而导致基因插入、缺失或替换。尽管CRISPR/Cas系统具有变革潜力,但在优化该系统方面仍存在一些挑战,包括脱靶效应、递送方法、原间隔序列临近基序(PAM)限制以及传统编辑方法的局限性。本综述重点关注这些挑战之间的相互作用,以及它们对基因编辑的精准性、特异性、可及性、灵活性和安全性的影响。探讨了减少脱靶效应如何提高特异性和安全性,同时讨论了基于同源定向修复(HDR)的编辑在实现精确基因修饰中的作用,以及碱基编辑和引导编辑等替代方法。研究了改进的递送机制对可及性和效率的影响,强调了减少PAM限制对灵活性的贡献。最后,评估了新兴的无切割编辑技术与安全性和可及性的关系。这篇重点综述旨在阐明这些方面之间的联系,并概述推进基于CRISPR的应用的未来研究方向。