从加拿大食品中分离出的六个具有多重耐药基因菌株的全基因组序列。
Complete genome sequences of six strains with multiple resistance genes isolated from food products in Canada.
作者信息
Kang Mingsong, Harjadi Darrell, Hoover Emily, Dan Hanhong, Adam Bailie, Huang Hongsheng
机构信息
Ottawa Laboratory - Fallowfield, Canadian Food Inspection Agency, Ottawa, Ontario, Canada.
Greater Toronto Area Laboratory, Canadian Food Inspection Agency, Toronto, Ontario, Canada.
出版信息
Microbiol Resour Announc. 2025 Jul 10;14(7):e0030125. doi: 10.1128/mra.00301-25. Epub 2025 Jun 23.
Abstract
species are widespread, opportunistic Gram-negative microbes found in diverse environments, with some species posing risks to humans, potentially through food. In this announcement, we present six complete genome sequences of two strains for each of , , and respectively, isolated from food in Canada.
摘要
该物种分布广泛，是在各种环境中都能发现的机会性革兰氏阴性微生物，其中一些物种可能通过食物对人类构成风险。在本公告中，我们展示了分别从加拿大食物中分离出的、、各两个菌株的六个完整基因组序列。
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1
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Brief Bioinform. 2024 May 23;25(4). doi: 10.1093/bib/bbae322.
2
A long-term survey of spp. bloodstream infections revealed an increase of antimicrobial resistance involving adult population.一项对 spp.血流感染的长期调查显示，成人人群的抗菌药物耐药性增加。
Microbiol Spectr. 2024 Feb 6;12(2):e0276223. doi: 10.1128/spectrum.02762-23. Epub 2024 Jan 17.
3
Diminishing the Pathogenesis of the Food-Borne Pathogen by Low Doses of Sodium Citrate.低剂量柠檬酸钠减轻食源性病原体的发病机制
Biology (Basel). 2023 Mar 26;12(4):504. doi: 10.3390/biology12040504.
4
Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes.纳米孔长读长测序技术仅进行宏基因组学分析即可实现模拟和复杂宏基因组的完整、高质量的基因组重建。
Microbiome. 2022 Dec 2;10(1):209. doi: 10.1186/s40168-022-01415-8.
5
The genus Serratia revisited by genomics.基因组学再探沙雷氏菌属。
Nat Commun. 2022 Sep 3;13(1):5195. doi: 10.1038/s41467-022-32929-2.
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Polypolish: Short-read polishing of long-read bacterial genome assemblies.多聚波兰：长读细菌基因组组装的短读抛光。
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7
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Microbiome. 2021 Feb 17;9(1):49. doi: 10.1186/s40168-020-00993-9.
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NanoPack: visualizing and processing long-read sequencing data.NanoPack：可视化和处理长读测序数据。
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