Bioactive compounds of natural origin are central to the development of nutraceutical formulations. To improve their stability and to target their delivery to the intestinal or colonic tract, alginate/k-carrageenan spherical gels have been produced at different volumetric ratios (100/0, 70/30, 50/50, 30/70, and 0/100 /), by means of solution dripping and external gelation. Different drying methods were compared, and only through supercritical technologies was it possible to achieve interpenetrated networks that feature nanometric pore size distribution. Hybrid aerogels inherited the most relevant characteristics of alginate and k-carrageenan: they showed remarkable water uptake capacity (e.g., 50.60 g/g), and stability in aqueous media over large timespans. Naringin release tests in simulated intestinal and colonic fluids proved that it is possible to target drug delivery by choosing intermediate alginate/k-carrageenan ratios. Overall, by means of supercritical gel drying, it is possible to generate advanced biopolymeric aerogels, yielding fully natural interpenetrated networks that valorize the most compelling properties of each species involved.