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拓扑卷积神经网络:基于拓扑深度学习的视网膜图像分析

Topo-CNN: Retinal Image Analysis with Topological Deep Learning.

作者信息

Ahmed Faisal, Bhuiyan Mohammad Alfrad Nobel, Coskunuzer Baris

机构信息

Department of Data Science and Mathematics, Embry-Riddle Aeronautical University, 3700 Willow Creek Rd, 86301, Prescott, AZ, USA.

Department of Medicine, Louisiana State University Health Sciences Center at Shreveport, 1501 Kings Highway, 71103, Shreveport, LA, USA.

出版信息

J Imaging Inform Med. 2025 Jun 25. doi: 10.1007/s10278-025-01575-7.

DOI:10.1007/s10278-025-01575-7
PMID:40563040
Abstract

The analysis of fundus images is vital for early detection of retinal diseases such as diabetic retinopathy (DR), glaucoma, and age-related macular degeneration (AMD), but traditional methods are resource-intensive. We propose an automated and interpretable diagnostic framework that leverages novel feature representations to improve performance. Our main contribution is a topological feature extraction technique based on Topological Data Analysis (TDA), which captures geometric and structural patterns in fundus images. These features are computationally efficient and interpretable. We integrate them with pretrained CNN features (e.g., ResNet-50) into a hybrid deep model, Topo-CNN, combining global image context with topological structure. We evaluate Topo-CNN on three benchmarks: APTOS (binary and five-class DR), ORIGA (Glaucoma), and IChallenge-AMD. Our model achieves 98.7% accuracy/98.9 AUC on binary DR, 95.5 AUC on five-class DR, 93.8% accuracy/93.6 AUC on AMD, and 82.3% accuracy/95.8 specificity on glaucoma. Ablation studies confirm the added value of topological features, and our Topo-CNN consistently outperforms existing methods across tasks.

摘要

眼底图像分析对于诸如糖尿病视网膜病变(DR)、青光眼和年龄相关性黄斑变性(AMD)等视网膜疾病的早期检测至关重要,但传统方法资源消耗大。我们提出了一种自动化且可解释的诊断框架,该框架利用新颖的特征表示来提高性能。我们的主要贡献是一种基于拓扑数据分析(TDA)的拓扑特征提取技术,它能捕捉眼底图像中的几何和结构模式。这些特征计算效率高且可解释。我们将它们与预训练的卷积神经网络(CNN)特征(如ResNet - 50)集成到一个混合深度模型Topo - CNN中,将全局图像上下文与拓扑结构相结合。我们在三个基准数据集上评估Topo - CNN:APTOS(二元和五类DR)、ORIGA(青光眼)和IChallenge - AMD。我们的模型在二元DR上达到了98.7%的准确率/98.9的AUC,在五类DR上达到了95.5的AUC,在AMD上达到了93.8%的准确率/93.6的AUC,在青光眼上达到了82.3%的准确率/95.8的特异性。消融研究证实了拓扑特征的附加价值,并且我们的Topo - CNN在各项任务中始终优于现有方法。

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本文引用的文献

1
Automated Machine Learning for Predicting Diabetic Retinopathy Progression From Ultra-Widefield Retinal Images.基于超广角视网膜图像的糖尿病视网膜病变进展预测的自动化机器学习。
JAMA Ophthalmol. 2024 Mar 1;142(3):171-177. doi: 10.1001/jamaophthalmol.2023.6318.
2
A Deep-Learning Algorithm to Predict Short-Term Progression to Geographic Atrophy on Spectral-Domain Optical Coherence Tomography.一种基于深度学习算法预测光谱域光学相干断层扫描下的地理萎缩短期进展。
JAMA Ophthalmol. 2023 Nov 1;141(11):1052-1061. doi: 10.1001/jamaophthalmol.2023.4659.
3
Artificial intelligence and machine learning in ophthalmology: A review.
人工智能和机器学习在眼科学中的应用:综述。
Indian J Ophthalmol. 2023 Jan;71(1):11-17. doi: 10.4103/ijo.IJO_1569_22.
4
Identification of glaucoma from fundus images using deep learning techniques.利用深度学习技术从眼底图像中识别青光眼。
Indian J Ophthalmol. 2021 Oct;69(10):2702-2709. doi: 10.4103/ijo.IJO_92_21.
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Explainable Deep Learning Models in Medical Image Analysis.医学图像分析中的可解释深度学习模型
J Imaging. 2020 Jun 20;6(6):52. doi: 10.3390/jimaging6060052.
6
DRISTI: a hybrid deep neural network for diabetic retinopathy diagnosis.DRISTI:一种用于糖尿病视网膜病变诊断的混合深度神经网络。
Signal Image Video Process. 2021;15(8):1679-1686. doi: 10.1007/s11760-021-01904-7. Epub 2021 Apr 16.
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Machine Learning Techniques for Ophthalmic Data Processing: A Review.机器学习技术在眼科数据处理中的应用:综述
IEEE J Biomed Health Inform. 2020 Dec;24(12):3338-3350. doi: 10.1109/JBHI.2020.3012134. Epub 2020 Dec 4.
8
Clinical Interpretable Deep Learning Model for Glaucoma Diagnosis.临床可解释的深度学习模型用于青光眼诊断。
IEEE J Biomed Health Inform. 2020 May;24(5):1405-1412. doi: 10.1109/JBHI.2019.2949075. Epub 2019 Oct 23.
9
Deep learning in medical image analysis: A third eye for doctors.深度学习在医学图像分析中的应用:医生的“第三只眼”。
J Stomatol Oral Maxillofac Surg. 2019 Sep;120(4):279-288. doi: 10.1016/j.jormas.2019.06.002. Epub 2019 Jun 26.
10
Fast and accurate tumor segmentation of histology images using persistent homology and deep convolutional features.利用持久同调与深度卷积特征实现快速准确的组织学图像肿瘤分割。
Med Image Anal. 2019 Jul;55:1-14. doi: 10.1016/j.media.2019.03.014. Epub 2019 Apr 4.