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整合网络药理学、分子动力学模拟和实验验证策略以探究[具体药物或物质]抗酒精性肝损伤的潜在机制

Integrating Strategy of Network Pharmacology, Molecular Dynamics Simulation, and Experimental Verification to Investigate the Potential Mechanism of Against Alcoholic Liver Injury.

作者信息

Sun Peiyuan, Zhang Ruohan, Li Xuanyou, Yang Dengwang, Ji Shunfeng, Peng Lei, Sheng Jun, Wang Jing

机构信息

Key Laboratory of Development and Utilization of Food and Medicinal Resources, Ministry of Education, Yunnan Agricultural University, Kunming 650201, China.

College of Science, Yunnan Agricultural University, Kunming 650201, China.

出版信息

Foods. 2025 Jun 6;14(12):2008. doi: 10.3390/foods14122008.

Abstract

As one of the medicinal and edible resources, (GE) is considered to hold potential in alleviating alcoholic liver injury, yet its mechanism needs further elucidation. To explore the molecular mechanisms of GE against alcoholic liver injury, network pharmacology, molecular docking, molecular dynamics simulations, and cell experiments were employed. Thirty-two active components of GE may exert efficacy against alcohol-induced liver injury via regulating 207 targets. Among them, the main functional components might be 4-hydroxybenzyl methyl ether, 4-ethoxytolyl-4'-hydroxybenzyl ether, pseudolaric acid B, palmitic acid, and myricetin. Analyses of Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment showed that a total of 322 GO items and 154 KEGG pathways are related to the effects of GE against alcoholic liver injury. The results of molecular docking show that the main active components of GE might interact with the key target proteins of GAPDH, PPARG, EGFR, STAT3, and AKT1. Molecular dynamics simulation further determined that pseudolaric acid B, as the core component, stably binds to these key target proteins. Cell experiments demonstrate that pseudolaric acid B exhibits a protective effect on ethanol-induced HepG2 cell injury by down-regulating the protein expression levels of GAPDH, STAT3, PPARG, and EGFR. Furthermore, the agent also suppresses IL-6 and inhibits the abnormal absorption of total cholesterol in HepG2 cells. Our findings suggest the efficacy and mechanism of GE in combating alcoholic liver injury and lay the groundwork for the precise development and utilization of GE.

摘要

作为药食同源资源之一,绞股蓝(GE)被认为在减轻酒精性肝损伤方面具有潜力,但其作用机制尚需进一步阐明。为探究绞股蓝抗酒精性肝损伤的分子机制,采用了网络药理学、分子对接、分子动力学模拟和细胞实验等方法。绞股蓝的32种活性成分可能通过调控207个靶点发挥抗酒精性肝损伤的功效。其中,主要功能成分可能是4-羟基苄基甲醚、4-乙氧基甲苯基-4'-羟基苄基醚、伪雷公藤酸B、棕榈酸和杨梅素。基因本体论(GO)富集分析和京都基因与基因组百科全书(KEGG)通路富集分析表明,共有322个GO条目和154条KEGG通路与绞股蓝抗酒精性肝损伤的作用相关。分子对接结果表明,绞股蓝的主要活性成分可能与甘油醛-3-磷酸脱氢酶(GAPDH)、过氧化物酶体增殖物激活受体γ(PPARG)、表皮生长因子受体(EGFR)、信号转导和转录激活因子3(STAT3)及蛋白激酶B(AKT1)等关键靶蛋白相互作用。分子动力学模拟进一步确定,伪雷公藤酸B作为核心成分,能稳定结合这些关键靶蛋白。细胞实验表明,伪雷公藤酸B通过下调GAPDH、STAT3、PPARG和EGFR的蛋白表达水平,对乙醇诱导的HepG2细胞损伤具有保护作用。此外,该药物还能抑制白细胞介素-6(IL-6),并抑制HepG2细胞中总胆固醇的异常吸收。我们的研究结果揭示了绞股蓝抗酒精性肝损伤的功效和机制,为绞股蓝的精准开发和利用奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/abbc/12191591/cd7a56b3d972/foods-14-02008-g001.jpg

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