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加速PROTAC药物发现的方法。

Methods to accelerate PROTAC drug discovery.

作者信息

Osman Jeyan, Thompson Philip E, Jörg Manuela, Scanlon Martin J

机构信息

Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, VIC, Australia.

ARC Training Centre for Fragment Based Design, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, VIC, Australia.

出版信息

Biochem J. 2025 Jun 25;482(13):BCJ20243018. doi: 10.1042/BCJ20243018.

DOI:10.1042/BCJ20243018
PMID:40570202
Abstract

Proteolysis-targeting chimeras (PROTACs) represent a novel and promising modality for probing biological systems, elucidating pharmacological mechanisms, and identifying potential therapeutic leads. The field has made significant strides, as demonstrated by the growing number of PROTACs advancing to clinical trials. Despite this progress, the development of PROTACs faces significant challenges, which is partially due to the heterobivalent nature of this class of molecules. PROTACs must simultaneously bind to a protein of interest and an E3 ubiquitin ligase. This means PROTACs are significantly larger and more complex than conventional small molecules. This complexity impacts their design and synthesis, requiring strategic approaches to create libraries of PROTACs with various combinations of target ligands, linkers, and E3 ligase-recruiting elements. To fully realise the potential of this innovative technology, there is a need for novel approaches to accelerate the development of PROTACs. This review focuses on three critical areas to accelerate PROTAC development: appropriate target selection, modular chemical synthesis, and high-throughput biological evaluation. By appropriate selection of target proteins for degradation, optimizing synthesis methods to handle the complexity of PROTAC molecules, and employing robust high-throughput biological assays to evaluate PROTAC activity, researchers in academia and industry have streamlined the development and increased the success rate of PROTAC-based discovery programmes.

摘要

靶向蛋白降解嵌合体(PROTACs)是一种用于探索生物系统、阐明药理机制和识别潜在治疗先导物的新颖且有前景的方法。该领域已取得重大进展,越来越多的PROTACs进入临床试验就证明了这一点。尽管取得了这一进展,但PROTACs的开发仍面临重大挑战,部分原因在于这类分子的异二价性质。PROTACs必须同时与目标蛋白和E3泛素连接酶结合。这意味着PROTACs比传统小分子要大得多且复杂得多。这种复杂性影响了它们的设计和合成,需要采用战略方法来创建具有各种目标配体、连接子和E3连接酶招募元件组合的PROTACs文库。为了充分实现这项创新技术的潜力,需要有新颖的方法来加速PROTACs的开发。本综述重点关注加速PROTAC开发的三个关键领域:合适的靶点选择、模块化化学合成和高通量生物学评估。通过适当选择用于降解的目标蛋白、优化合成方法以应对PROTAC分子的复杂性,并采用强大的高通量生物学检测来评估PROTAC活性,学术界和工业界的研究人员简化了开发过程,提高了基于PROTAC的发现计划的成功率。

相似文献

1
Methods to accelerate PROTAC drug discovery.加速PROTAC药物发现的方法。
Biochem J. 2025 Jun 25;482(13):BCJ20243018. doi: 10.1042/BCJ20243018.
2
A close-up shot of protein-protein docking, from experiment to theory and reverse with the PROTAC performers.蛋白质-蛋白质对接的特写镜头,从实验到理论,再由PROTAC作用物实现逆向过程。
J Biomol Struct Dyn. 2025 Jul;43(11):5260-5267. doi: 10.1080/07391102.2024.2308778. Epub 2024 Jan 29.
3
Epigenetic therapy meets targeted protein degradation: HDAC-PROTACs in cancer treatment.表观遗传疗法与靶向蛋白质降解相结合:癌症治疗中的组蛋白去乙酰化酶-蛋白酶体靶向嵌合体
Future Med Chem. 2025 Jul 16:1-13. doi: 10.1080/17568919.2025.2533113.
4
Accurate PROTAC-targeted degradation prediction with DegradeMaster.使用DegradeMaster进行准确的PROTAC靶向降解预测。
Bioinformatics. 2025 Jul 1;41(Supplement_1):i342-i351. doi: 10.1093/bioinformatics/btaf191.
5
PROTAC-Based Antivirals for Respiratory Viruses: A Novel Approach for Targeted Therapy and Vaccine Development.基于PROTAC的呼吸道病毒抗病毒药物:靶向治疗和疫苗开发的新方法
Microorganisms. 2025 Jul 2;13(7):1557. doi: 10.3390/microorganisms13071557.
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Primary Amine-Based Photoclick Chemistry: From Concept to Diverse Applications in Chemical Biology and Medicinal Chemistry.基于伯胺的光点击化学:从概念到化学生物学和药物化学中的多样应用
Acc Chem Res. 2025 Jun 18. doi: 10.1021/acs.accounts.5c00158.
7
Advancing Design Strategy of PROTACs for Cancer Therapy.用于癌症治疗的PROTACs的先进设计策略
MedComm (2020). 2025 Jun 25;6(7):e70258. doi: 10.1002/mco2.70258. eCollection 2025 Jul.
8
Advances in KEAP1-based PROTACs as emerging therapeutic modalities: Structural basis and progress.基于KEAP1的PROTACs作为新兴治疗方式的进展:结构基础与研究进展
Redox Biol. 2025 Jul 21;85:103781. doi: 10.1016/j.redox.2025.103781.
9
Unveiling New Triazoloquinoxaline-Based PROTACs Designed for the Selective Degradation of the ncBAF Chromatin Remodeling Subunit BRD9.揭示基于三唑并喹喔啉的新型PROTAC,其设计用于选择性降解ncBAF染色质重塑亚基BRD9。
Chemistry. 2025 Jun 17;31(34):e202404218. doi: 10.1002/chem.202404218. Epub 2025 May 20.
10
Integrating Proteolysis-Targeting Chimeras (PROTACs) with Delivery Systems for More Efficient and Precise Targeted Protein Degradation.将蛋白酶靶向嵌合体(PROTACs)与递送系统相结合以实现更高效、精准的靶向蛋白降解
Macromol Rapid Commun. 2025 Apr 4:e2401051. doi: 10.1002/marc.202401051.

本文引用的文献

1
Recommended Tool Compounds: Thienotriazolodiazepines-Derivatized Chemical Probes to Target BET Bromodomains.推荐的工具化合物:靶向BET溴结构域的噻吩并三唑二氮杂卓衍生化学探针。
ACS Pharmacol Transl Sci. 2025 Mar 14;8(4):978-1012. doi: 10.1021/acsptsci.4c00726. eCollection 2025 Apr 11.
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G protein-coupled receptor-targeted proteolysis-targeting chimeras in cancer therapeutics.
癌症治疗中靶向G蛋白偶联受体的蛋白酶靶向嵌合体
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A Kinetic Scout Approach Accelerates Targeted Protein Degrader Development.一种动力学筛选方法加速靶向蛋白质降解剂的开发。
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Structural and Physicochemical Features of Oral PROTACs.口服 PROTACs 的结构和物理化学特征。
J Med Chem. 2024 Aug 8;67(15):13106-13116. doi: 10.1021/acs.jmedchem.4c01017. Epub 2024 Jul 30.
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Costs of Drug Development and Research and Development Intensity in the US, 2000-2018.2000-2018 年美国药品研发成本和研发强度
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Click Chemistry: Reaction Rates and Their Suitability for Biomedical Applications.点击化学:反应速率及其在生物医学中的适用性。
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8
New-generation advanced PROTACs as potential therapeutic agents in cancer therapy.新一代先进的 PROTAC 作为癌症治疗中的潜在治疗剂。
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9
Accelerating PROTACs Discovery Through a Direct-to-Biology Platform Enabled by Modular Photoclick Chemistry.通过模块化光点击化学实现的直接生物学平台加速 PROTACs 的发现。
Adv Sci (Weinh). 2024 Jul;11(26):e2400594. doi: 10.1002/advs.202400594. Epub 2024 Apr 30.
10
Breaking Bad Proteins-Discovery Approaches and the Road to Clinic for Degraders.破坏坏蛋白——降解剂的发现途径与走向临床。
Cells. 2024 Mar 26;13(7):578. doi: 10.3390/cells13070578.