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用于剖析跨尺度微生物群落相互作用的类咕啉模型。

The Corrinoid Model for Dissecting Microbial Community Interactions Across Scales.

作者信息

Alvarez-Aponte Zoila I, Procknow Rebecca R, Taga Michiko E

机构信息

Department of Plant and Microbial Biology, University of California, Berkeley, California, USA; email:

出版信息

Annu Rev Microbiol. 2025 Jun 27. doi: 10.1146/annurev-micro-051024-044734.

DOI:10.1146/annurev-micro-051024-044734
PMID:40577842
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12416548/
Abstract

Microbial communities in different environments have major impacts on global nutrient cycling and on the health of host organisms. However, the complexity of microbial communities complicates the investigation of how interactions among numerous microbial species, each with distinct features and metabolic capabilities, affect global processes. In this review, we describe the corrinoid model for investigating microbial community interactions across scales, from individual microbes to complex natural communities. Corrinoids are the vitamin B12 (cobalamin) family of organometallic cofactors. While numerous metabolic processes across all domains of life require corrinoids, only a fraction of bacterial and archaeal species produce them. This structurally diverse set of shared nutrients influences community structure in different ways. Knowledge about corrinoid biology at each scale informs and reinforces a robust model that can be expanded to increase our understanding of microbial communities.

摘要

不同环境中的微生物群落对全球养分循环和宿主生物的健康有着重大影响。然而,微生物群落的复杂性使得研究众多具有不同特征和代谢能力的微生物物种之间的相互作用如何影响全球进程变得复杂。在这篇综述中,我们描述了类咕啉模型,用于研究从单个微生物到复杂自然群落等不同尺度上的微生物群落相互作用。类咕啉是维生素B12(钴胺素)家族的有机金属辅因子。虽然生命所有领域的众多代谢过程都需要类咕啉,但只有一小部分细菌和古菌物种能够产生它们。这组结构多样的共享养分以不同方式影响群落结构。关于每个尺度上类咕啉生物学的知识为一个强大的模型提供了信息并加强了该模型,这个模型可以扩展以增进我们对微生物群落的理解。

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本文引用的文献

1
Microbes display broad diversity in cobamide preferences.微生物在钴胺素偏好方面表现出广泛的多样性。
mSystems. 2025 Apr 22;10(4):e0140724. doi: 10.1128/msystems.01407-24. Epub 2025 Mar 21.
2
Laboratory evolution of with a natural vitamin B analog reveals roles for cobamide uptake and adenosylation in methionine synthase-dependent growth.使用天然维生素B类似物进行的实验室进化揭示了钴胺素摄取和腺苷酸化在甲硫氨酸合酶依赖性生长中的作用。
J Bacteriol. 2025 Feb 20;207(2):e0028424. doi: 10.1128/jb.00284-24. Epub 2025 Jan 28.
3
Skin-associated shares cobamides.
与皮肤相关的(组织)共享钴胺素。
mSphere. 2025 Jan 28;10(1):e0060624. doi: 10.1128/msphere.00606-24. Epub 2024 Dec 18.
4
Corrinoid salvaging and cobamide remodeling in bacteria and archaea.细菌和古菌中的类钴胺素回收和 cobamide 重塑。
J Bacteriol. 2024 Nov 21;206(11):e0028624. doi: 10.1128/jb.00286-24. Epub 2024 Oct 15.
5
Presence of vitamin B metabolism in the last common ancestor of land plants.在陆地植物的最后共同祖先中存在维生素 B 代谢。
Philos Trans R Soc Lond B Biol Sci. 2024 Nov 18;379(1914):20230354. doi: 10.1098/rstb.2023.0354. Epub 2024 Sep 30.
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Soil microbial community response to corrinoids is shaped by a natural reservoir of vitamin B12.土壤微生物群落对钴胺素的反应受维生素 B12 自然储库的影响。
ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae094.
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Ligand cross-feeding resolves bacterial vitamin B auxotrophies.配体交叉喂养解决了细菌维生素B营养缺陷问题。
Nature. 2024 May;629(8013):886-892. doi: 10.1038/s41586-024-07396-y. Epub 2024 May 8.
8
Phylogenetic distribution and experimental characterization of corrinoid production and dependence in soil bacterial isolates.土壤细菌分离物中钴胺素产生和依赖的系统发育分布及实验特性。
ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae068.
9
Bidirectional ATP-driven transport of cobalamin by the mycobacterial ABC transporter BacA.分枝杆菌 ABC 转运蛋白 BacA 介导的钴胺素的双向 ATP 驱动转运。
Nat Commun. 2024 Mar 23;15(1):2626. doi: 10.1038/s41467-024-46917-1.
10
Global biogeography and ecological implications of cobamide-producing prokaryotes.产钴胺素原核生物的全球生物地理学和生态影响。
ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae009.