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2
The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024.2024 年 EMBL-EBI 作业调度程序序列分析工具框架
Nucleic Acids Res. 2024 Jul 5;52(W1):W521-W525. doi: 10.1093/nar/gkae241.
3
RNA molecular recording with an engineered RNA deaminase.用工程化 RNA 脱氨酶进行 RNA 分子记录。
Nat Methods. 2023 Dec;20(12):1887-1899. doi: 10.1038/s41592-023-02046-z. Epub 2023 Oct 19.
4
Maintenance of pluripotency-like signature in the entire ectoderm leads to neural crest stem cell potential.维持整个外胚层中的多能性样特征可导致神经嵴干细胞潜能。
Nat Commun. 2023 Sep 23;14(1):5941. doi: 10.1038/s41467-023-41384-6.
5
"Beyond transcription: How post-transcriptional mechanisms drive neural crest EMT".“超越转录:后转录机制如何驱动神经嵴 EMT”。
Genesis. 2024 Feb;62(1):e23553. doi: 10.1002/dvg.23553. Epub 2023 Sep 21.
6
RNA-binding protein Elavl1/HuR is required for maintenance of cranial neural crest specification.RNA 结合蛋白 Elavl1/HuR 对于颅神经嵴细胞的特化维持是必需的。
Elife. 2022 Oct 3;11:e63600. doi: 10.7554/eLife.63600.
7
Time to go: neural crest cell epithelial-to-mesenchymal transition.离开的时间:神经嵴细胞上皮-间充质转化。
Development. 2022 Aug 1;149(15). doi: 10.1242/dev.200712. Epub 2022 Jul 29.
8
MicroRNAs in neural crest development and neurocristopathies.神经嵴发育和神经嵴病变中的 microRNAs。
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9
Single-cell atlas of early chick development reveals gradual segregation of neural crest lineage from the neural plate border during neurulation.早期鸡胚发育的单细胞图谱揭示了神经嵴谱系在神经褶形成过程中逐渐从神经板边缘分离。
Elife. 2022 Jan 28;11:e74464. doi: 10.7554/eLife.74464.
10
Expression atlas of avian neural crest proteins: Neurulation to migration.鸟类神经嵴蛋白表达图谱:神经胚形成到迁移。
Dev Biol. 2022 Mar;483:39-57. doi: 10.1016/j.ydbio.2021.12.018. Epub 2022 Jan 4.

早期神经嵴发育过程中Pumilio基因表达的特征分析。

Characterization of Pumilio gene expression during early neural crest development.

作者信息

Guzman-Espinoza Mariann, Vander Wende Helen M, Pacheco Jessica L, Roldán Alejandra Olano, Hutchins Erica J

机构信息

Department of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA, USA; Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California San Francisco, San Francisco, CA, USA.

Department of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA, USA; Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California San Francisco, San Francisco, CA, USA; Oral and Craniofacial Sciences Graduate Program, School of Dentistry, University of California San Francisco, San Francisco, CA, USA.

出版信息

Differentiation. 2025 Jul-Aug;144:100883. doi: 10.1016/j.diff.2025.100883. Epub 2025 Jun 23.

DOI:10.1016/j.diff.2025.100883
PMID:40580645
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12236992/
Abstract

Neural crest cells are multipotent cells present in vertebrate embryos that give rise to a wide array of cell types and tissues. A growing number of studies have identified post-transcriptional regulatory events that are essential for multiple stages of neural crest development, though a thorough characterization of the post-transcriptional regulators controlling these events is currently lacking. From single cell RNA-sequencing data, we identified members of the Pumilio family of RNA-binding proteins, PUM1 and PUM2, as candidate post-transcriptional regulators of neural crest development. Using hybridization chain reaction (HCR) in avian embryos (Gallus gallus), we characterized the spatiotemporal expression of Pumilio family mRNAs during early stages of cranial neural crest development. We show that Pum1 and Pum2, though expressed throughout the three germ layers, were enriched in ectodermally-derived tissues, and following neurulation, Pum1 and Pum2 show distinct expression patterns. We observed that Pum1 displayed a more uniform expression throughout the neural tube and neural crest during neural crest specification and the epithelial-mesenchymal transition (EMT). In contrast, Pum2 was enriched in neural crest cells poised to undergo EMT. We thus hypothesize that PUM1 and PUM2, often speculated to be functionally redundant, may play distinct roles at key steps of neural crest development.

摘要

神经嵴细胞是脊椎动物胚胎中存在的多能细胞,可分化为多种细胞类型和组织。越来越多的研究已经确定了转录后调控事件,这些事件对神经嵴发育的多个阶段至关重要,尽管目前缺乏对控制这些事件的转录后调节因子的全面表征。从单细胞RNA测序数据中,我们确定了RNA结合蛋白Pumilio家族的成员PUM1和PUM2,作为神经嵴发育的候选转录后调节因子。利用鸡胚(Gallus gallus)中的杂交链式反应(HCR),我们表征了颅神经嵴发育早期阶段Pumilio家族mRNA的时空表达。我们发现,虽然Pum1和Pum2在三个胚层中均有表达,但在外胚层来源的组织中富集,并且在神经胚形成后,Pum1和Pum2表现出不同的表达模式。我们观察到,在神经嵴特化和上皮-间充质转化(EMT)过程中,Pum1在整个神经管和神经嵴中表现出更均匀的表达。相比之下,Pum2在准备进行EMT的神经嵴细胞中富集。因此,我们推测通常被认为功能冗余的PUM1和PUM2可能在神经嵴发育的关键步骤中发挥不同的作用。