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野生型和突变型PMEL淀粉样蛋白核心的冷冻电镜揭示色素分散综合征的结构机制。

Cryo-EM of wild-type and mutant PMEL amyloid cores reveals structural mechanism of pigment dispersion syndrome.

作者信息

Yanagisawa Haruaki, Arai Harumi, Wang Tony, Miyazawa Hideyuki, Kikkawa Masahide, Oda Toshiyuki

机构信息

Department of Cell Biology and Anatomy, Graduate School of Medicine, the University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.

Department of Anatomy and Structural Biology, Graduate School of Medicine, University of Yamanashi, 1110 Shimokato, Chuo, Yamanashi, 409-3898, Japan.

出版信息

Nat Commun. 2025 Jul 1;16(1):5411. doi: 10.1038/s41467-025-61233-y.

DOI:10.1038/s41467-025-61233-y
PMID:40595665
Abstract

PMEL amyloids serve as essential scaffolds for melanin deposition in melanosomes, playing a crucial role in pigmentation. Despite their importance, the high-resolution structure of PMEL amyloids has remained unresolved. Using cryo-electron microscopy, we determine near-atomic resolution structures of wild-type PMEL amyloid core, revealing two distinct polymorphic forms with structural features. We further investigate the pathogenic G175S mutation associated with pigment dispersion syndrome (PDS). Structural analysis reveales that G175S introduces an additional hydrogen bond, stabilizing an alternative fibril conformation. In vitro, the G175S mutant exhibits a fourfold increase in polymerization efficiency compared to the wild type. In cells, G175S expression resultes in a twofold increase in intracellular amyloid content and a ~70% increase in extracellular amyloids, without altering melanosome morphology or number. These results indicate that the G175S mutation enhances amyloidogenesis within melanosomes, elevating amyloid load and potentially contributing to PDS pathophysiology. This study provides molecular insights into PMEL amyloid formation, highlighting its structural diversity and dysregulation in pigmentation disorders.

摘要

PMEL淀粉样蛋白是黑素体中黑色素沉积的重要支架,在色素沉着中起关键作用。尽管它们很重要,但PMEL淀粉样蛋白的高分辨率结构仍未得到解析。利用冷冻电子显微镜,我们确定了野生型PMEL淀粉样蛋白核心的近原子分辨率结构,揭示了两种具有结构特征的不同多态形式。我们进一步研究了与色素播散综合征(PDS)相关的致病性G175S突变。结构分析表明,G175S引入了一个额外的氢键,稳定了一种替代的原纤维构象。在体外,与野生型相比,G175S突变体的聚合效率提高了四倍。在细胞中,G175S的表达导致细胞内淀粉样蛋白含量增加两倍,细胞外淀粉样蛋白增加约70%,而不改变黑素体的形态或数量。这些结果表明,G175S突变增强了黑素体内的淀粉样蛋白生成,增加了淀粉样蛋白负荷,并可能导致PDS的病理生理过程。这项研究为PMEL淀粉样蛋白的形成提供了分子见解,突出了其在色素沉着障碍中的结构多样性和失调。

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1
Cryo-EM of wild-type and mutant PMEL amyloid cores reveals structural mechanism of pigment dispersion syndrome.野生型和突变型PMEL淀粉样蛋白核心的冷冻电镜揭示色素分散综合征的结构机制。
Nat Commun. 2025 Jul 1;16(1):5411. doi: 10.1038/s41467-025-61233-y.
2
Mutations in or near the transmembrane domain alter PMEL amyloid formation from functional to pathogenic.跨膜结构域中的突变或附近的突变将 PMEL 淀粉样蛋白从功能性转变为致病性。
PLoS Genet. 2011 Sep;7(9):e1002286. doi: 10.1371/journal.pgen.1002286. Epub 2011 Sep 15.
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PMEL Amyloid Fibril Formation: The Bright Steps of Pigmentation.PMEL淀粉样纤维形成:色素沉着的显著步骤。
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The Kringle-like Domain Facilitates Post-endoplasmic Reticulum Changes to Premelanosome Protein (PMEL) Oligomerization and Disulfide Bond Configuration and Promotes Amyloid Formation.类kringle结构域促进内质网后阶段的前黑素小体蛋白(PMEL)寡聚化和二硫键构型变化,并促进淀粉样蛋白形成。
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Critical residues in the PMEL/Pmel17 N-terminus direct the hierarchical assembly of melanosomal fibrils.PMEL/Pmel17 N 端的关键残基指导黑素体原纤维的分级组装。
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Biogenesis of fibrils requires C-mannosylation of PMEL.原纤维的生物发生需要 PMEL 的 C-甘露糖基化。
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Cryo-Electron Microscopy Provides Mechanistic Insights into Solution-Dependent Polymorphism and Cross-Aggregation Phenomena of the Human and Rat Islet Amyloid Polypeptides.冷冻电子显微镜为人类和大鼠胰岛淀粉样多肽的溶液依赖性多态性和交叉聚集现象提供了机制性见解。
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Melanosomal formation of PMEL core amyloid is driven by aromatic residues.PMEL 核心淀粉样蛋白的黑素小体形成由芳香族残基驱动。
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本文引用的文献

1
Cryo-EM structures of cotton wool plaques' amyloid β and of tau filaments in dominantly inherited Alzheimer disease.棉绒斑淀粉样 β 和显性遗传性阿尔茨海默病中 tau 丝的冷冻电镜结构。
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An image processing pipeline for electron cryo-tomography in RELION-5.在 RELION-5 中用于电子冷冻断层成像的图像处理流水线。
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Cryo-EM structures of amyloid-β and tau filaments in Down syndrome.
唐氏综合征中淀粉样β和tau 纤维的低温电子显微镜结构。
Nat Struct Mol Biol. 2024 Jun;31(6):903-909. doi: 10.1038/s41594-024-01252-3. Epub 2024 Mar 29.
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Automated model building and protein identification in cryo-EM maps.冷冻电镜映射中自动模型构建和蛋白质鉴定。
Nature. 2024 Apr;628(8007):450-457. doi: 10.1038/s41586-024-07215-4. Epub 2024 Feb 26.
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Cryo-EM elucidates the uroplakin complex structure within liquid-crystalline lipids in the porcine urothelial membrane.冷冻电镜解析了猪尿路上皮膜中液晶脂质内尿路上皮蛋白复合结构。
Commun Biol. 2023 Oct 7;6(1):1018. doi: 10.1038/s42003-023-05393-x.
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UCSF ChimeraX: Tools for structure building and analysis.UCSF ChimeraX:结构构建和分析工具。
Protein Sci. 2023 Nov;32(11):e4792. doi: 10.1002/pro.4792.
7
Amyloid fibril structures of tau: Conformational plasticity of the second microtubule-binding repeat.tau 淀粉样纤维结构:第二个微管结合重复的构象可塑性。
Sci Adv. 2023 Jul 14;9(28):eadh4731. doi: 10.1126/sciadv.adh4731.
8
Functional Amyloids: Where Supramolecular Amyloid Assembly Controls Biological Activity or Generates New Functionality.功能性淀粉样蛋白:超分子淀粉样组装控制生物活性或产生新功能的地方。
J Mol Biol. 2023 Jun 1;435(11):167919. doi: 10.1016/j.jmb.2022.167919. Epub 2023 Jun 16.
9
A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0.基于 RELION-4.0 的单颗粒电子冷冻断层成像的贝叶斯方法。
Elife. 2022 Dec 5;11:e83724. doi: 10.7554/eLife.83724.
10
Cryo-EM structure of an ATTRwt amyloid fibril from systemic non-hereditary transthyretin amyloidosis.系统性非遗传性转甲状腺素蛋白淀粉样变性的野生型 ATTR 淀粉样纤维的冷冻电镜结构。
Nat Commun. 2022 Oct 27;13(1):6398. doi: 10.1038/s41467-022-33591-4.