基于组学的结直肠癌微生物诊断现状。

State of omics-based microbial diagnostics of CRC.

作者信息

Prusa Jerome, Gorelik Mark G, Blake Kevin S, Dantas Gautam

机构信息

Department of Pathology and Immunology, Division of Laboratory and Genomic Medicine, Washington University School of Medicine, St. Louis, MO, USA.

The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA.

出版信息

Gut Microbes. 2025 Dec;17(1):2526132. doi: 10.1080/19490976.2025.2526132. Epub 2025 Jul 2.

Abstract

Colorectal cancer (CRC) remains a major burden of cancer-related morbidity and mortality globally, especially when detected at later stages. Early detection through improved and more accessible diagnostics is critical for reducing the severity of CRC. As our understanding of CRC and the microbial inhabitants of the gastrointestinal tract continues to improve, it has become increasingly recognized that the bacterial component of the gut microbiome may provide diagnostic utility for detecting CRC. This is because CRC is often accompanied by shifts in bacterial taxa, and the metabolites produced or utilized by the CRC-associated gut bacterial community. Advances in sequencing and metabolite profiling technologies paired with our growing understanding of CRC-associated microbial taxa, present an opportunity for new gut microbiome-based diagnostics. In this narrative review, we discuss bacterial taxa and gut metabolites that have been investigated as predictive features for CRC diagnosis. We aim to highlight the tremendous progress that has been made in identifying gut microbiome-based features and why they should be further explored as potential CRC diagnostics. We also identify challenges that future work must address, including the impact of patient lifestyle, variation in methodology, and nonstandard data management practices. Resolving these areas of study design and implementation is key to understanding the complex bacterial communities and their by-products associated with CRC, and the development of microbial diagnostics that can detect them.

摘要

结直肠癌(CRC)仍然是全球癌症相关发病率和死亡率的主要负担,尤其是在晚期被检测到时。通过改进且更易获得的诊断方法进行早期检测对于降低CRC的严重程度至关重要。随着我们对CRC以及胃肠道微生物群落的了解不断深入,越来越多的人认识到肠道微生物群的细菌成分可能为检测CRC提供诊断价值。这是因为CRC通常伴随着细菌分类群的变化,以及与CRC相关的肠道细菌群落产生或利用的代谢产物的变化。测序和代谢物谱分析技术的进步,以及我们对与CRC相关的微生物分类群的日益了解,为基于肠道微生物群的新诊断方法提供了机会。在这篇叙述性综述中,我们讨论了已被研究作为CRC诊断预测特征的细菌分类群和肠道代谢物。我们旨在强调在识别基于肠道微生物群的特征方面取得的巨大进展,以及为什么应将它们作为潜在的CRC诊断方法进一步探索。我们还确定了未来工作必须解决的挑战,包括患者生活方式的影响、方法学的差异以及非标准数据管理实践。解决这些研究设计和实施领域的问题是理解与CRC相关的复杂细菌群落及其副产物,以及开发能够检测它们的微生物诊断方法的关键。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d7c/12233711/37431447fe9b/KGMI_A_2526132_F0001_OC.jpg

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