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绿唇鱼(Cheilinus chlorourus)(布洛赫,1791年)(鲈形目:隆头鱼科)的染色体水平基因组组装

Chromosome-level genome assembly of Cheilinus chlorourus (Bloch, 1791) (Perciformes: Labridae).

作者信息

Qu Jiangyong, Yang Xueying, Song Zhuoran, Wang Shuang, Xing Zhikai, Wang Lijun, Wang Xumin

机构信息

School of Life Science, Yantai University, Yantai, Shandong, 264005, China.

出版信息

Sci Data. 2025 Jul 2;12(1):1133. doi: 10.1038/s41597-025-05288-y.

Abstract

In the classification of marine fish, the Labridae family ranks second in terms of species diversity and plays a vital role in coral reef ecosystems, comprising over 600 species across 82 genera. Despite its significance for ecological and evolutionary studies, genomic research on this group has lagged, resulting in a shortage of data, particularly regarding high-quality chromosome-level genome assemblies. To address this gap, this study focused on Cheilinus chlorourus from the Labridae family and successfully achieved a chromosome-level genome assembly. By integrating Illumina, PacBio, and Hi-C sequencing data, we assembled a genome measuring 940.36 Mb, with 926.86 Mb (98.56%) of the gene assembly organized into 21 chromosomes. A total of 29,213 protein-coding genes (PCGs) were identified, and 79.93% of these genes were functionally annotated. With this high-quality genome assembly, future investigations into the functional genomics and ecology of C. chlorourus will have a solid scientific foundation.

摘要

在海洋鱼类分类中,隆头鱼科在物种多样性方面排名第二,在珊瑚礁生态系统中发挥着至关重要的作用,该科涵盖82个属的600多种鱼类。尽管其对生态和进化研究具有重要意义,但对该类群的基因组研究却滞后了,导致数据短缺,尤其是高质量的染色体水平基因组组装数据。为填补这一空白,本研究聚焦于隆头鱼科的绿唇鱼,并成功完成了染色体水平的基因组组装。通过整合Illumina、PacBio和Hi-C测序数据,我们组装出一个大小为940.36 Mb的基因组,其中926.86 Mb(98.56%)的基因组装被组织成21条染色体。共鉴定出29213个蛋白质编码基因(PCG),其中79.93%的基因得到了功能注释。有了这个高质量的基因组组装,未来对绿唇鱼功能基因组学和生态学的研究将有坚实的科学基础。

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