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带有“不良”反射的良好数据:在重新测定O-乙基-N-苯基氨基甲酸酯结构中使用非球形散射因子。

Good data with `bad' reflections: the employment of non-spherical scattering factors in the redetermination of the structure of O-ethyl N-phenylcarbamate.

作者信息

Jones Peter G

机构信息

Institut für Anorganische und Analytische Chemie, Technische Universität Braunschweig, Hagenring 30, D-38106 Braunschweig, Germany.

出版信息

Acta Crystallogr C Struct Chem. 2025 Aug 1;81(Pt 8):455-461. doi: 10.1107/S2053229625005959. Epub 2025 Jul 10.

DOI:10.1107/S2053229625005959
PMID:40637544
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12322929/
Abstract

The structure of O-ethyl N-phenylthiocarbamate, CHNOS (2), has been redetermined, confirming the results obtained in three earlier structure determinations. The higher data quality provided by modern diffractomers has enabled a reliable analysis (absent from the earlier reports) of the hydrogen bonding. However, conventional refinement of the structure of 2 was unsatisfactory because of the large number of extremely badly-fitting reflections, leading to many checkCIF `ALERT A' messages that might be detrimental to ease of publication. A refinement using nonspherical scattering factors effectively eliminated this problem. There are three independent molecules of 2 in the asymmetric unit; two are directly connected by two N-H...S hydrogen bonds, forming a dimer with the well-known R(8) motif. The other molecule forms a topologically identical but inversion-symmetric dimer. Each type of dimer occupies a different region parallel to the ac plane (molecule 1, y ≃ 0; molecules 2 and 3, y ≃ 1/3 and 2/3). All three molecules lie in planes parallel to (031). The title compound is effectively isotypic to 1-ethyl-3-phenylthiourea (another known structure for which the hydrogen bonding was not analysed) because its EtNH group, like the EtO group of 2, is not involved in hydrogen bonding.

摘要

O-乙基-N-苯基硫代氨基甲酸酯(CHNOS,2)的结构已被重新测定,证实了早期三次结构测定所得到的结果。现代衍射仪提供的更高质量的数据使得对氢键进行可靠分析(早期报告中没有)成为可能。然而,由于存在大量拟合极差的反射,对2的结构进行常规精修并不令人满意,导致许多checkCIF“警告A”信息,这可能不利于论文发表。使用非球形散射因子进行精修有效消除了这个问题。不对称单元中有三个2的独立分子;其中两个通过两个N-H...S氢键直接相连,形成具有著名R(8)基序的二聚体。另一个分子形成拓扑结构相同但具有反演对称性的二聚体。每种二聚体占据平行于ac平面的不同区域(分子1,y≃0;分子2和3,y≃1/3和2/3)。所有三个分子都位于平行于(031)的平面内。标题化合物与1-乙基-3-苯基硫脲(另一个已知结构,其氢键未被分析)实际上是同型的,因为它的EtNH基团,就像2的EtO基团一样,不参与氢键形成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/8c78efb51df6/c-81-00455-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/3e1caaf90806/c-81-00455-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/fc521c8dbf8b/c-81-00455-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/96e8dde63666/c-81-00455-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/db1fe2ed3879/c-81-00455-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/8c78efb51df6/c-81-00455-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/3e1caaf90806/c-81-00455-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/fc521c8dbf8b/c-81-00455-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/96e8dde63666/c-81-00455-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/db1fe2ed3879/c-81-00455-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69d7/12322929/8c78efb51df6/c-81-00455-fig5.jpg

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