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中国医学科学数据存储库的建设:调查分析与建议

Construction of medical scientific data repositories in China: analysis of survey and recommendations.

作者信息

Song Jia, Li Chunqiu, Chansanam Wirapong

机构信息

School of Management, Shenzhen Polytechnic University, Shenzhen, China.

Centre for Modern Industry and SME, Shenzhen, China.

出版信息

Front Artif Intell. 2025 Jun 26;8:1544200. doi: 10.3389/frai.2025.1544200. eCollection 2025.

DOI:10.3389/frai.2025.1544200
PMID:40642661
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12240949/
Abstract

BACKGROUND

In the context of global open science trends, medical open-access repositories (OARs) promote transparency in research and facilitate the sharing of scientific data. The increase in scientific output necessitates a robust infrastructure to enhance OARs in China.

OBJECTIVES

This study aimed to evaluate medical open-access repositories (OARs) in China that are indexed in re3data.org and OpenDOAR.org. The study analyzed data classification, descriptions, retrieval, and the utilization of selected repositories.

METHODS

This study ascertained the current status of the Chinese medical OARs by visiting their respective websites and attempted to identify the disciplinary orientation of each OAR. A content analysis approach was utilized to achieve this study's objective. Twelve Chinese medical open-access repositories were selected from re3data.org and OpenDOAR.org to examine how their information is organized. The data were collected manually from May 1 to 30, 2023, and analyzed using various quantitative techniques to understand the current status of medical scientific repositories in China.

RESULTS

Based on the results, this study proposed the following recommendations: (1) implement multi-dimensional data classification, (2) use persistent data identifiers, (3) formalize the description metadata, (4) enhance advanced retrieval and result set filtering functions, and (5) optimize the preview and interaction features of data repositories.

CONCLUSION

The scope of this study is restricted to the medical open-access repositories in China as listed on re3data.org and OpenDOAR.org. Therefore, the results of this study are only generalizable within China. The primary focus of research output in China is on medical open-access repositories. This study is essential for assessing China's current status in research data management within the medical field and its distribution infrastructure in global open science trends.

摘要

背景

在全球开放科学趋势的背景下,医学开放获取知识库(OARs)促进了研究的透明度,并推动了科学数据的共享。科学产出的增加需要强大的基础设施来加强中国的OARs。

目的

本研究旨在评估在中国re3data.org和OpenDOAR.org上被索引的医学开放获取知识库(OARs)。该研究分析了所选知识库的数据分类、描述、检索和利用情况。

方法

本研究通过访问中国医学OARs各自的网站来确定其现状,并试图确定每个OAR的学科方向。采用内容分析法来实现本研究的目标。从re3data.org和OpenDOAR.org中选取了12个中国医学开放获取知识库,以研究其信息的组织方式。数据于2023年5月1日至30日手动收集,并使用各种定量技术进行分析,以了解中国医学科学知识库的现状。

结果

基于研究结果,本研究提出了以下建议:(1)实施多维数据分类;(2)使用持久数据标识符;(3)规范描述元数据;(4)增强高级检索和结果集筛选功能;(5)优化数据知识库的预览和交互功能。

结论

本研究的范围仅限于re3data.org和OpenDOAR.org上列出的中国医学开放获取知识库。因此,本研究的结果仅在中国范围内具有普遍性。中国研究产出的主要重点是医学开放获取知识库。本研究对于评估中国医学领域研究数据管理的现状及其在全球开放科学趋势中的传播基础设施至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83d0/12240949/00e40b50f573/frai-08-1544200-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83d0/12240949/00e40b50f573/frai-08-1544200-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/83d0/12240949/00e40b50f573/frai-08-1544200-g001.jpg

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Position of the AI for Health Imaging (AI4HI) network on metadata models for imaging biobanks.AI 健康影像学(AI4HI)网络在影像学生物库元数据模型方面的立场。
Eur Radiol Exp. 2022 Jul 1;6(1):29. doi: 10.1186/s41747-022-00281-1.
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A global view of standards for open image data formats and repositories.开放图像数据格式和存储库标准的全球视野。
Nat Methods. 2021 Dec;18(12):1440-1446. doi: 10.1038/s41592-021-01113-7.
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Systematic examination of preprint platforms for use in the medical and biomedical sciences setting.对用于医学和生物医学科学领域的预印本平台进行系统审查。
BMJ Open. 2020 Dec 29;10(12):e041849. doi: 10.1136/bmjopen-2020-041849.
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Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium.转化研究中的数据和知识管理:执行 IMI OncoTrack 联盟的 eTRIKS 平台。
BMC Bioinformatics. 2019 Apr 1;20(1):164. doi: 10.1186/s12859-019-2748-y.