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番茄中响应激素和非生物胁迫的基因家族的全基因组鉴定与表达谱分析

Genome-Wide Identification and Expression Profiling of Gene Family in Response to Hormone and Abiotic Stresses in L.

作者信息

Cao Haohao, Wang Danfeng, Li Xiaoli, Zhang Yi, Su Deding, Lu Wang, Xu Kedong, Li Zhengguo

机构信息

Key Laboratory of Crop Molecular Breeding and Bioreactor of Henan, Zhou Kou Normal University, Zhoukou 466000, China.

Key Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), School of Life Science, China West Normal University, Nanchong 637001, China.

出版信息

Int J Mol Sci. 2025 Jun 23;26(13):6008. doi: 10.3390/ijms26136008.

DOI:10.3390/ijms26136008
PMID:40649787
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12250332/
Abstract

The enhancer-binding protein (GeBP) gene family, a plant-specific class of transcriptional regulators, is involved in multiple biological processes, including the formation of trichomes, plant growth, and environmental adaptation. However, the functional characterization of genes in tomato remains poor, particularly regarding their roles in regulating developmental processes and stress response mechanisms. In this study, 11 family members were identified from the tomato genome and 97 GeBP proteins from six species were classified into three groups. A wide range of elements linked to phytohormone, stress, and plant development were presented on the promoter sequences. Gene expression profile analysis revealed a comprehensive expression during the vegetative and immature fruit development stages. Analysis of the expression level under nine hormones and seven stresses can help us to understand the responsiveness of genes associated with hormone induction and stress tolerance. Subcellular localization analysis exhibited that SlGeBP1 and SlGeBP5 were localized in the nucleus, and the yeast two-hybrid assay confirmed that SlGeBP1 could interact with SlGeBP5. This study will help us to understand the potential function of the family and may establish a basis for further research on phytohormone signaling and stress resistance.

摘要

增强子结合蛋白(GeBP)基因家族是一类植物特有的转录调节因子,参与多个生物学过程,包括毛状体的形成、植物生长和环境适应。然而,番茄中该基因家族的功能特征仍不清楚,尤其是它们在调节发育过程和应激反应机制中的作用。在本研究中,从番茄基因组中鉴定出11个家族成员,并将来自六个物种的97个GeBP蛋白分为三组。启动子序列上呈现了与植物激素、胁迫和植物发育相关的多种元件。基因表达谱分析显示在营养生长和未成熟果实发育阶段有广泛的表达。对九种激素和七种胁迫下表达水平的分析有助于我们了解与激素诱导和胁迫耐受性相关基因的反应性。亚细胞定位分析表明SlGeBP1和SlGeBP5定位于细胞核,酵母双杂交试验证实SlGeBP1可与SlGeBP5相互作用。本研究将有助于我们了解该家族的潜在功能,并可能为进一步研究植物激素信号传导和抗逆性奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d120/12250332/f43f44e505a5/ijms-26-06008-g010.jpg
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本文引用的文献

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Comprehensive identification of ripening-related RNA-binding proteins in tomatoes using improved plant phase extraction.利用改进的植物相提取法全面鉴定番茄中与成熟相关的RNA结合蛋白。
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Association of GhGeBP genes with fiber quality and early maturity related traits in upland cotton.陆地棉纤维品质和早熟相关性状与 GhGeBP 基因的关联。
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