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基于片段的靶向胆固醇代谢小分子抑制剂的开发

Fragment-Based Development of Small Molecule Inhibitors Targeting Cholesterol Metabolism.

作者信息

Kavanagh Madeline E, McLean Kirsty J, Gilbert Sophie H, Amadi Cecilia N, Snee Matthew, Tunnicliffe Richard B, Arora Kriti, Boshoff Helena I M, Fanourakis Alexander, Rebollo-Lopez Maria Jose, Ortega Fatima, Levy Colin W, Munro Andrew W, Leys David, Abell Chris, Coyne Anthony G

机构信息

Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.

Centre for Synthetic Biology of Fine and Specialty Chemicals (SYNBIOCHEM), Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.

出版信息

J Med Chem. 2025 Jul 24;68(14):14416-14441. doi: 10.1021/acs.jmedchem.5c00478. Epub 2025 Jul 13.

DOI:10.1021/acs.jmedchem.5c00478
PMID:40653654
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12305662/
Abstract

Tuberculosis is the deadliest infectious disease in history and new drugs are urgently required to combat multidrug-resistant (MDR) strains of (). Here, we exploit the relience of on host-derived cholesterol to develop a novel class of antitubercular compounds that target CYP125 and CYP142; the enzymes that catalyze the first step of cholesterol metabolism. A combination of fragment screening and structure-based drug design was used to identify a hit compound and guide synthetic optimization of a dual CYP125/142 ligand ( 40-160 nM), which potently inhibits enzyme activity in vitro ( < 100 nM), and the growth of in extracellular (MIC 0.4-1.5 μM) and intracellular assays (IC 1.7 μM). The structural data and lead compounds reported here will help study cholesterol metabolism and guide the development of novel antibiotics to combat MDR

摘要

结核病是历史上最致命的传染病,迫切需要新药来对抗多重耐药(MDR)结核分枝杆菌菌株。在此,我们利用结核分枝杆菌对宿主来源胆固醇的依赖性,开发了一类新型抗结核化合物,其靶向CYP125和CYP142;这两种酶催化胆固醇代谢的第一步。结合片段筛选和基于结构的药物设计来鉴定一种命中化合物,并指导双CYP125/142配体(40-160 nM)的合成优化,该配体在体外能有效抑制酶活性(<100 nM),并在细胞外(MIC 0.4-1.5 μM)和细胞内试验(IC 1.7 μM)中抑制结核分枝杆菌的生长。本文报道的结构数据和先导化合物将有助于研究结核分枝杆菌的胆固醇代谢,并指导开发对抗多重耐药结核分枝杆菌的新型抗生素

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/f7a304e310d2/jm5c00478_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/2320c9985167/jm5c00478_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/f756f5d022e0/jm5c00478_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/0081a8aeb330/jm5c00478_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/5e56cc1c6ec7/jm5c00478_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/d1ea05a1f612/jm5c00478_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/f7a304e310d2/jm5c00478_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/2320c9985167/jm5c00478_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/f756f5d022e0/jm5c00478_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/0081a8aeb330/jm5c00478_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/5e56cc1c6ec7/jm5c00478_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/d1ea05a1f612/jm5c00478_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2953/12305662/f7a304e310d2/jm5c00478_0005.jpg

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本文引用的文献

1
Structure Based Discovery of Inhibitors of CYP125 and CYP142 from Mycobacterium tuberculosis.基于结构的结核分枝杆菌 CYP125 和 CYP142 抑制剂的发现。
Chemistry. 2023 May 22;29(29):e202203868. doi: 10.1002/chem.202203868. Epub 2023 Apr 12.
2
Safety, Tolerability, and Pharmacokinetics of Telacebec (Q203), a New Antituberculosis Agent, in Healthy Subjects.新型抗结核药物特立齐酮(Q203)在健康受试者中的安全性、耐受性和药代动力学。
Antimicrob Agents Chemother. 2022 Jan 18;66(1):e0143621. doi: 10.1128/AAC.01436-21. Epub 2021 Oct 25.
3
Cholesterol-dependent transcriptome remodeling reveals new insight into the contribution of cholesterol to Mycobacterium tuberculosis pathogenesis.
胆固醇依赖的转录组重塑揭示了胆固醇对结核分枝杆菌发病机制贡献的新见解。
Sci Rep. 2021 Jun 11;11(1):12396. doi: 10.1038/s41598-021-91812-0.
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Bioenergetic Inhibitors: Antibiotic Efficacy and Mechanisms of Action in .生物能量抑制剂:抗生素在……中的疗效及作用机制
Front Cell Infect Microbiol. 2021 Jan 11;10:611683. doi: 10.3389/fcimb.2020.611683. eCollection 2020.
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Fragment Linking Strategies for Structure-Based Drug Design.基于结构的药物设计的片段连接策略。
J Med Chem. 2020 Oct 22;63(20):11420-11435. doi: 10.1021/acs.jmedchem.0c00242. Epub 2020 Jun 23.
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The antibiotic bedaquiline activates host macrophage innate immune resistance to bacterial infection.抗生素贝达喹啉激活宿主巨噬细胞固有免疫抵抗细菌感染。
Elife. 2020 May 4;9:e55692. doi: 10.7554/eLife.55692.
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Analyzing the impact of Mycobacterium tuberculosis infection on primary human macrophages by combined exploratory and targeted metabolomics.通过联合探索性和靶向代谢组学分析结核分枝杆菌感染对原代人巨噬细胞的影响。
Sci Rep. 2020 Apr 27;10(1):7085. doi: 10.1038/s41598-020-62911-1.
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New tuberculosis drug targets, their inhibitors, and potential therapeutic impact.新的结核病药物靶点、抑制剂及其潜在的治疗影响。
Transl Res. 2020 Jun;220:68-97. doi: 10.1016/j.trsl.2020.03.007. Epub 2020 Mar 16.
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Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.利用 X 射线、中子和电子进行高分子结构测定: Phenix 的最新进展。
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. doi: 10.1107/S2059798319011471. Epub 2019 Oct 2.
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